Package: tigre

Version: 1.4.2

Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings tigre_1.4.2.tar.gz

StartedAt: 2011-04-07 09:02:20 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 09:03:59 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 99.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: tigre.Rcheck

Warnings: 1

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/tigre.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'tigre/DESCRIPTION' ... OK
* this is package 'tigre' version '1.4.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'tigre' can be installed ... WARNING
Found the following significant warnings:
  Warning: running command 'C:\WINDOWS\system32\cmd.exe /c ftype perl' had status 2
  Warning: running command 'C:\WINDOWS\system32\cmd.exe /c ftype perl' had status 2
See 'E:/biocbld/bbs-2.7-bioc/meat/tigre.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.7-bioc/meat/tigre.Rcheck/00check.log'
for details

* installing *source* package 'tigre' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c miscCFunctions.c -o miscCFunctions.o
gcc -shared -s -static-libgcc -o tigre.dll tmp.def miscCFunctions.o -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/tigre.Rcheck/tigre/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: gplots
Loading required package: gtools
Loading required package: gdata
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\WINDOWS\system32\cmd.exe /c ftype perl' had status 2
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\WINDOWS\system32\cmd.exe /c ftype perl' had status 2
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.

gdata: Unable to load perl libaries needed by read.xls()
gdata: to support 'XLSX' (Excel 2007+) files.

gdata: Run the function 'installXLSXsupport()'
gdata: to automatically download and install the perl
gdata: libaries needed to support Excel XLS and XLSX formats.

Attaching package: 'gdata'

The following object(s) are masked from 'package:Biobase':

    combine

The following object(s) are masked from 'package:utils':

    object.size

Loading required package: caTools
Loading required package: bitops
Loading required package: grid

Attaching package: 'gplots'

The following object(s) are masked from 'package:stats':

    lowess

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (tigre)

name	user	system	elapsed
ExpressionTimeSeries-class	0	0	0
GPLearn	2.02	0.11	2.43
GPModel-class	0	0	0
GPPlot	0	0	0
GPRankTargets	0	0	0
SCGoptim	0	0	0
expTransform	0	0	0
export	0	0	0
generateModels	0	0	0
gpsimCreate	0	0	0
kernCompute	0.02	0.00	0.02
kernCreate	0	0	0
kernDiagGradX	0	0	0
kernGradient	0	0	0
lnDiffErfs	0	0	0
modelDisplay	0.38	0.00	0.38
modelExpandParam	0	0	0
modelExtractParam	0.45	0.00	0.50
modelGradient	0.61	0.02	0.62
modelTieParam	0	0	0
optimiDefaultConstraint	0	0	0
plotTimeseries	0.22	0.00	0.25
processData	0.56	0.00	0.56
scoreList-class	0	0	0
tigre-package	0	0	0