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Package 127/419HostnameOS / ArchBUILDCHECKBUILD BIN
fabia 1.2.0
Sepp Hochreiter
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/fabia
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: fabia
Version: 1.2.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings fabia_1.2.0.tar.gz
StartedAt: 2011-04-07 06:51:57 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 06:52:57 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 60.5 seconds
RetCode: 0
Status:  OK  
CheckDir: fabia.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/fabia.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fabia/DESCRIPTION' ... OK
* this is package 'fabia' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'fabia' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

fabia.Rcheck/00install.out:

* installing *source* package 'fabia' ...
Building libRcpp.a in RcppSrc...
rm -f Rcpp.o  libRcpp.a
g++ -c Rcpp.cpp -o Rcpp.o -I"E:/biocbld/BBS-2˜1.7-B/R/include" -I"E:/biocbld/BBS-2˜1.7-B/R/src/include"  -Wall -O2
ar r libRcpp.a Rcpp.o
C:\Rtools212\MinGW\bin\ar.exe: creating libRcpp.a
ranlib libRcpp.a
rm -f Rcpp.o
rm -f Rcpp.o 
** libs
  running src/Makefile.win ...
rm -f fabia.o fabia.dll *.a *.o *.so *.dll
g++ -c fabiac.cpp -o fabia.o -I../RcppSrc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -Wall -O2
g++ -shared -s -static-libgcc fabia.o -L../RcppSrc -lRcpp  -L"E:/biocbld/BBS-2˜1.7-B/R/bin/i386"  -lR  -o fabia.dll 
rm -f fabia.o *.a *.o *.so
installing to E:/biocbld/bbs-2.7-bioc/meat/fabia.Rcheck/fabia/libs/i386
** R
** demo
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "fabia"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (fabia)

fabia.Rcheck/fabia-Ex.timings:

nameusersystemelapsed
estimateMode0.080.000.08
extractBic0.190.000.21
extractPlot1.840.001.86
fabi0.640.000.66
fabia0.190.000.19
fabiaDemo000
fabiaVersion000
fabiap0.190.000.19
fabias0.190.000.18
fabiasp1.230.001.24
makeFabiaData0.140.030.28
makeFabiaDataBlocks0.020.010.11
makeFabiaDataBlocksPos0.040.040.11
makeFabiaDataPos0.070.030.12
matrixImagePlot0.050.030.11
mfsc0.20.00.2
nmfdiv0.170.000.17
nmfeu0.160.000.16
nmfsc0.050.000.05
plot-methods0.870.030.90
plotBicluster0.190.030.24
projFunc000
projFuncPos000
show-methods0.220.000.21
showSelected-methods0.210.000.20
summary-methods0.220.000.22