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Package 164/419HostnameOS / ArchBUILDCHECKBUILD BIN
GeneticsPed 1.12.0
David Henderson
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/GeneticsPed
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS [ OK ]
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 

Summary

Package: GeneticsPed
Version: 1.12.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneticsPed.buildbin-libdir GeneticsPed_1.12.0.tar.gz
StartedAt: 2011-04-07 09:25:39 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 09:25:55 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 16.5 seconds
RetCode: 0
Status:  OK  
PackageFile: GeneticsPed_1.12.0.zip
PackageFileSize: 781.3 KiB

Command output

* installing *source* package 'GeneticsPed' ...
** libs
g++ -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O2 -Wall  -c ainverse.cc -o ainverse.o
g++ -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O2 -Wall  -c eibd.cc -o eibd.o
gfortran     -O3  -c ggmatmult.f -o ggmatmult.o
gfortran     -O3  -c gpi.f -o gpi.o
g++ -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O2 -Wall  -c inbreed.cc -o inbreed.o
g++ -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O2 -Wall  -c inverseAdditive.cc -o inverseAdditive.o
g++ -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O2 -Wall  -c meuwissen.cc -o meuwissen.o
g++ -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O2 -Wall  -c pedSort.cc -o pedSort.o
g++ -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O2 -Wall  -c pedtemplate.cc -o pedtemplate.o
g++ -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O2 -Wall  -c register.cc -o register.o
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O3 -Wall  -std=gnu99 -c sargolzaei.c -o sargolzaei.o
g++ -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O2 -Wall  -c sortped.cc -o sortped.o
g++ -shared -s -static-libgcc -o GeneticsPed.dll tmp.def ainverse.o eibd.o ggmatmult.o gpi.o inbreed.o inverseAdditive.o meuwissen.o pedSort.o pedtemplate.o register.o sargolzaei.o sortped.o -lgfortran -LE:/biocbld/bbs-2.7-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/GeneticsPed.buildbin-libdir/GeneticsPed/libs/i386
** R
** data
** inst
** preparing package for lazy loading
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\WINDOWS\system32\cmd.exe /c ftype perl' had status 2
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\WINDOWS\system32\cmd.exe /c ftype perl' had status 2
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.

gdata: Unable to load perl libaries needed by read.xls()
gdata: to support 'XLSX' (Excel 2007+) files.

gdata: Run the function 'installXLSXsupport()'
gdata: to automatically download and install the perl
gdata: libaries needed to support Excel XLS and XLSX formats.

Attaching package: 'gdata'

The following object(s) are masked from 'package:utils':

    object.size

Loading required package: combinat

Attaching package: 'combinat'

The following object(s) are masked from 'package:utils':

    combn

Loading required package: gtools
Loading required package: MASS
Loading required package: mvtnorm

NOTE: THIS PACKAGE IS NOW OBSOLETE.

  The R-Genetics project has developed an set of enhanced genetics
  packages to replace 'genetics'. Please visit the project homepage
  at http://rgenetics.org for informtion.


Attaching package: 'genetics'

The following object(s) are masked from 'package:base':

    %in%, as.factor, order

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneticsPed' as GeneticsPed_1.12.0.zip

* DONE (GeneticsPed)