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Package 419/419HostnameOS / ArchBUILDCHECKBUILD BIN
yaqcaffy 1.10.1
Laurent Gatto
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/yaqcaffy
Last Changed Rev: 51586 / Revision: 54281
Last Changed Date: 2010-12-17 09:02:41 -0800 (Fri, 17 Dec 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ WARNINGS ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: yaqcaffy
Version: 1.10.1
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings yaqcaffy_1.10.1.tar.gz
StartedAt: 2011-03-31 09:10:18 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 09:13:53 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 215.2 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: yaqcaffy.Rcheck
Warnings: 1

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/yaqcaffy.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘yaqcaffy/DESCRIPTION’ ... OK
* this is package ‘yaqcaffy’ version ‘1.10.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘yaqcaffy’ can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import ‘plot’ when loading ‘graphics’
  Warning: replacing previous import ‘plot’ when loading ‘graphics’
See ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/yaqcaffy.Rcheck/00install.out’ for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/yaqcaffy.Rcheck/00check.log’
for details

yaqcaffy.Rcheck/00install.out:

* installing *source* package ‘yaqcaffy’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: gcrma
Warning: replacing previous import ‘plot’ when loading ‘graphics’
Creating a new generic function for "summary" in "yaqcaffy"
Creating a new generic function for "merge" in "yaqcaffy"
Creating a new generic function for "identical" in "yaqcaffy"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Warning: replacing previous import ‘plot’ when loading ‘graphics’

* DONE (yaqcaffy)

yaqcaffy.Rcheck/yaqcaffy-Ex.timings:

nameusersystemelapsed
YaqcControlProbes-class0.0040.0000.002
getAllInt17.821 0.26418.140
getBioProbes0.7680.0080.777
getOutliers48.659 0.53649.476
getQCRatios9.1610.0289.188
getRatioProbes1.1240.0241.148
getSpikeProbes1.0080.0121.020
probeSelectionInterface000
reprodPlot000
yaqc.affy8.4880.0968.583
yaqc.plot9.3610.1089.470
yaqc.summary9.5040.0649.566