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Package 319/419HostnameOS / ArchBUILDCHECKBUILD BIN
qpgraph 1.6.2
Robert Castelo
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/qpgraph
Last Changed Rev: 50838 / Revision: 54281
Last Changed Date: 2010-11-12 03:16:21 -0800 (Fri, 12 Nov 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: qpgraph
Version: 1.6.2
Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch qpgraph_1.6.2.tar.gz
StartedAt: 2011-03-31 07:21:24 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 07:26:34 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 310.1 seconds
RetCode: 0
Status:  OK 
CheckDir: qpgraph.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/qpgraph.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘qpgraph/DESCRIPTION’ ... OK
* this is package ‘qpgraph’ version ‘1.6.2’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘qpgraph’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

qpgraph.Rcheck/00install.out:

* installing *source* package ‘qpgraph’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... i686-apple-darwin9.8.0
checking host system type... i686-apple-darwin9.8.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/i386 -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic -c cliquer.c -o cliquer.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/i386 -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic -c graph.c -o graph.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/i386 -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic -c qpgraph.c -o qpgraph.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/i386 -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic -c reorder.c -o reorder.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/i386 -lRblas -L/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/i386 -lRlapack -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.7-bioc/meat/qpgraph.Rcheck/qpgraph/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (qpgraph)

qpgraph.Rcheck/qpgraph-Ex.timings:

nameusersystemelapsed
EcoliOxygen0.1270.0060.133
qpAnyGraph0.3270.1260.456
qpAvgNrr7.9260.1648.253
qpCItest0.0580.0030.061
qpClique0.9870.1451.229
qpCliqueNumber0.1960.0070.205
qpCov0.3220.2020.534
qpEdgeNrr0.0580.0030.061
qpFunctionalCoherence73.950 3.43382.080
qpG2Sigma0.0850.0030.088
qpGenNrr9.2190.3069.641
qpGetCliques0.6260.0120.643
qpGraph0.6830.1250.812
qpGraphDensity0.9460.1261.082
qpHist0.6930.1210.823
qpIPF0.4890.3080.825
qpK2ParCor0.0830.0020.086
qpNrr25.138 0.42525.819
qpPAC1.0200.2661.300
qpPCC0.3830.1770.565
qpPRscoreThreshold0.5150.1220.644
qpPlotNetwork0.5170.0220.586
qpPrecisionRecall0.6770.1230.807
qpRndGraph0.0190.0010.020
qpRndWishart0.0180.0020.020
qpTopPairs0.0060.0000.007
qpUnifRndAssociation0.0090.0020.011
qpUpdateCliquesRemoving23.537 0.65524.514