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Package 121/389HostnameOS / ArchBUILDCHECKBUILD BIN
flagme 1.4.0
Mark Robinson
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/flagme
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: flagme
Version: 1.4.0
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings flagme_1.4.0.tar.gz
StartedAt: 2010-10-04 17:59:40 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 18:01:05 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 85.6 seconds
RetCode: 0
Status:  OK  
CheckDir: flagme.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/flagme.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flagme/DESCRIPTION' ... OK
* this is package 'flagme' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flagme' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

flagme.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'flagme' ...
** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c dp.c -o dp.o
dp.c: In function 'dp':
dp.c:218: warning: 'cur_min' may be used uninitialized in this function
dp.c:217: warning: 'tb' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -shared -s -static-libgcc -o flagme.dll tmp.def dp.o init.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/flagme.Rcheck/flagme/libs
  ... done
** R
** inst
** preparing package for lazy loading
Package SparseM (0.86) loaded.
	   To cite, see citation("SparseM")

Creating a new generic function for "plot" in "flagme"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (flagme)

flagme.Rcheck/flagme-Ex.timings:

nameusersystemelapsed
addAMDISPeaks0.750.031.55
addChromaTOFPeaks0.220.060.28
betweenAlignment000
calcTimeDiffs1.360.082.12
clusterAlignment1.420.001.42
compress1.440.031.47
dp1.360.061.42
gatherInfo1.450.051.50
imputePeaks2.220.013.00
multipleAlignment1.410.051.45
normDotProduct1.310.051.36
parseChromaTOF5.270.005.39
parseELU4.370.004.37
peaksAlignment000
peaksDataset0.610.010.63
plot0.820.030.84
plotImage0.480.040.53
progressiveAlignment1.440.001.44
rmaFitUnit1.440.031.47