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Package 113/389HostnameOS / ArchBUILDCHECKBUILD BIN
eisa 1.0.0
Gabor Csardi
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/eisa
Last Changed Rev: 46467 / Revision: 49923
Last Changed Date: 2010-04-23 09:18:01 -0700 (Fri, 23 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: eisa
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings eisa_1.0.0.tar.gz
StartedAt: 2010-10-04 16:48:10 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 16:54:44 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 394.0 seconds
RetCode: 0
Status:  OK 
CheckDir: eisa.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/eisa.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'eisa/DESCRIPTION' ... OK
* this is package 'eisa' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'eisa' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

eisa.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘eisa’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: MASS

Attaching package: 'MASS'

The following object(s) are masked from 'package:genefilter':

    area

Loading required package: grid
Loading required package: vcd
Loading required package: colorspace
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (eisa)

eisa.Rcheck/eisa-Ex.timings:

nameusersystemelapsed
ALLModules0.0890.0050.098
ISA.CHR2.1570.1102.287
ISA.GO8.5800.7199.678
ISA.KEGG3.9880.1574.348
ISA32.643 9.29148.935
ISA.html27.9 2.436.8
ISA.iterate10.9 2.616.4
ISA.miRNA0.0200.0030.021
ISA.normalize 9.3 1.210.7
ISA.sweep21.2 7.627.7
ISA.unique10.7 2.713.5
ISA2heatmap2.970.173.19
ISAExpressionSet 8.7 1.110.5
ISAModules-class0.0260.0030.028
ListHyperGParams-class7.070.517.95
ListHyperGResult-class7.660.648.45
cond.plot4.210.324.58
eisa.biclust 8.7 2.211.0
enrichment1.4070.0441.466
exp.plot4.630.345.01
gograph8.50.89.6
mnplot5.030.345.47
overlap1.040.671.73
profilePlot3.170.183.38
robustness5.680.556.24