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Package 39/389HostnameOS / ArchBUILDCHECKBUILD BIN
beadarraySNP 1.14.0
Jan Oosting
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/beadarraySNP
Last Changed Rev: 47149 / Revision: 49923
Last Changed Date: 2010-05-26 11:24:55 -0700 (Wed, 26 May 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: beadarraySNP
Version: 1.14.0
Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings beadarraySNP_1.14.0.tar.gz
StartedAt: 2010-10-04 15:49:32 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 15:50:39 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 66.4 seconds
RetCode: 0
Status:  OK  
CheckDir: beadarraySNP.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/beadarraySNP.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'beadarraySNP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'beadarraySNP' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'beadarraySNP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

beadarraySNP.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'beadarraySNP' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: quantreg
Loading required package: SparseM
Package SparseM (0.86) loaded.
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

    backsolve

Loading required package: lodplot
Loading required package: grid
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (beadarraySNP)

beadarraySNP.Rcheck/beadarraySNP-Ex.timings:

nameusersystemelapsed
GenomicReports3.790.064.10
PolarTransforms0.020.000.01
SnpSetSegments-class000
backgroundCorrect.SNP000
calculateQCarray000
compareGenotypes000
dist.GT0.070.020.09
heterozygosity0.030.000.03
heterozygousSNPs0.110.000.11
normalizeBetweenAlleles.SNP0.110.000.11
normalizeBetweenSubsamples.SNP0.080.020.10
normalizeLoci.SNP0.030.000.03
normalizeWithinArrays.SNP0.050.000.05
pdfChromosomesSmoothCopyNumber000
plotQC0.020.000.01
read.SnpSetIllumina1.450.001.45
removeLowQualitySamples0.050.000.05
reportSamplePanelQC-methods0.020.000.01
standardNormalization0.180.000.19