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Package 378/389HostnameOS / ArchBUILDCHECKBUILD BIN
VanillaICE 1.10.0
Robert Scharpf
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/VanillaICE
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: VanillaICE
Version: 1.10.0
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD INSTALL --build --library=VanillaICE.buildbin-libdir VanillaICE_1.10.0.tar.gz
StartedAt: 2010-10-04 21:14:09 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 21:14:20 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 10.7 seconds
RetCode: 0
Status:  OK  
PackageFile: VanillaICE_1.10.0.zip
PackageFileSize: 2.204 MiB

Command output

* installing *source* package 'VanillaICE' ...

  Using auto-selected zip option '--use-zip-data'

** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c viterbi.c -o viterbi.o
viterbi.c: In function 'viterbi':
viterbi.c:61: warning: unused variable 'tp'
gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def viterbi.o -lm -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs
  ... done
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: oligoClasses
================================================================================
Welcome to oligoClasses version 1.10.0
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
Loading package bit1.1-6

package:bit (c) 2008/2009 Jens Oehlschlaegel (GPL-2)

creators: bit bitwhich

coercion: as.logical as.integer as.bit as.bitwhich which

operator: ! & | xor != == 

querying: print length any all min max range sum summary

bit access: length<- [ [<- [[ [[<-

for more help type ?bit

Loading package ff2.2-0

- getOption("fftempdir")=="E:/biocbld/bbs-2.6-bioc/tmpdir/RtmpzWaG78"

- getOption("ffextension")=="ff"

- getOption("ffdrop")==TRUE

- getOption("fffinonexit")==TRUE

- getOption("ffpagesize")==65536

- getOption("ffcaching")=="mmnoflush"  -- consider "ffeachflush" if your system stalls on large writes

- getOption("ffbatchbytes")==16095641.6 -- consider a different value for tuning your system

- getOption("ffmaxbytes")==804782080 -- consider a different value for tuning your system

Welcome to crlmm version 1.6.6

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
    rbind, rep.int, table

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Welcome to VanillaICE version 1.10.0
* MD5 sums
packaged installation of 'VanillaICE' as VanillaICE_1.10.0.zip

* DONE (VanillaICE)