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Package 369/389HostnameOS / ArchBUILDCHECKBUILD BIN
TargetSearch 1.4.2
Alvaro Cuadros-Inostroza
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/TargetSearch
Last Changed Rev: 49209 / Revision: 49923
Last Changed Date: 2010-09-02 12:14:00 -0700 (Thu, 02 Sep 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: TargetSearch
Version: 1.4.2
Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings TargetSearch_1.4.2.tar.gz
StartedAt: 2010-10-04 19:04:05 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 19:05:47 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 102.0 seconds
RetCode: 0
Status:  OK  
CheckDir: TargetSearch.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/TargetSearch.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TargetSearch/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TargetSearch' version '1.4.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'TargetSearch' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

TargetSearch.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'TargetSearch' ...
** libs
  making DLL ...
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c Rinit.c -o Rinit.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c find_peaks.c -o find_peaks.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c getLine.c -o getLine.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c hpf.c -o hpf.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c netcdf_peak_finding.c -o netcdf_peak_finding.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c peakExtraction.c -o peakExtraction.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c ppc.c -o ppc.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o TargetSearch.dll tmp.def Rinit.o find_peaks.o getLine.o hpf.o netcdf_peak_finding.o peakExtraction.o ppc.o -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/meat/TargetSearch.Rcheck/TargetSearch/libs/x64
  ... done
** R
** inst
** preparing package for lazy loading
Loading Tcl/Tk interface ... done
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (TargetSearch)

TargetSearch.Rcheck/TargetSearch-Ex.timings:

nameusersystemelapsed
FAMEoutliers0.190.000.21
FindPeaks0.670.002.68
ImportFameSettings0.020.000.01
ImportLibrary0.050.000.14
ImportSamples000
NetCDFPeakFinding0.550.041.01
Profile2.040.022.07
ProfileCleanUp1.880.031.91
RIcorrect30.54 1.5233.31
medianRILib1.190.001.19
peakFind0.660.000.65
plotFAME0.070.000.08
plotPeak0.610.010.62
plotRIdev0.940.020.96
plotSpectra0.620.000.62
quantMatrix1.880.011.89
ri2rt000
rt2ri000
sampleRI1.330.021.36
tsLib-class000
tsMSdata-class000
tsProfile-class000
tsRim-class000
tsSample-class0.070.000.08