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Package 342/389HostnameOS / ArchBUILDCHECKBUILD BIN
ShortRead 1.6.2
Biocore Team c/o BioC user list
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/ShortRead
Last Changed Rev: 46600 / Revision: 49923
Last Changed Date: 2010-04-28 10:21:31 -0700 (Wed, 28 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 [ OK ] OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: ShortRead
Version: 1.6.2
Command: chmod a+r ShortRead -R && D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD build ShortRead
StartedAt: 2010-10-04 14:26:54 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 14:27:34 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 39.9 seconds
RetCode: 0
Status:  OK  
PackageFile: ShortRead_1.6.2.tar.gz
PackageFileSize: 1.953 MiB

Command output

* checking for file 'ShortRead/DESCRIPTION' ... OK
* preparing 'ShortRead':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'ShortRead' ...
** libs
  making DLL ...
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"   -I"D:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/Biostrings/include"      -O2 -Wall  -std=gnu99 -c Biostrings_stubs.c -o Biostrings_stubs.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"   -I"D:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/Biostrings/include"      -O2 -Wall  -std=gnu99 -c IRanges_stubs.c -o IRanges_stubs.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"   -I"D:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/Biostrings/include"      -O2 -Wall  -std=gnu99 -c R_init_ShortRead.c -o R_init_ShortRead.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"   -I"D:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/Biostrings/include"      -O2 -Wall  -std=gnu99 -c alphabet.c -o alphabet.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"   -I"D:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/Biostrings/include"      -O2 -Wall  -std=gnu99 -c io.c -o io.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"   -I"D:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/Biostrings/include"      -O2 -Wall  -std=gnu99 -c io_bowtie.c -o io_bowtie.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"   -I"D:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/Biostrings/include"      -O2 -Wall  -std=gnu99 -c io_soap.c -o io_soap.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"   -I"D:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/Biostrings/include"      -O2 -Wall  -std=gnu99 -c pileup.c -o pileup.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include"   -I"D:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/Biostrings/include"      -O2 -Wall  -c readBfaToc.cc -o readBfaToc.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include"   -I"D:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/Biostrings/include"      -O2 -Wall  -c read_maq_map.cc -o read_maq_map.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"   -I"D:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/Biostrings/include"      -O2 -Wall  -std=gnu99 -c util.c -o util.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"   -I"D:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/Biostrings/include"      -O2 -Wall  -std=gnu99 -c xsnap.c -o xsnap.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o ShortRead.dll tmp.def Biostrings_stubs.o IRanges_stubs.o R_init_ShortRead.o alphabet.o io.o io_bowtie.o io_soap.o pileup.o readBfaToc.o read_maq_map.o util.o xsnap.o -lRzlib -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/tmpdir/Rinst119243292/ShortRead/libs/x64
  ... done
** R
** inst
** preparing package for lazy loading

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
    rbind, rep.int, table

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ShortRead)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'ShortRead_1.6.2.tar.gz'