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Package 179/389HostnameOS / ArchBUILDCHECKBUILD BIN
GraphAT 1.20.0
Thomas LaFramboise
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/GraphAT
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GraphAT
Version: 1.20.0
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings GraphAT_1.20.0.tar.gz
StartedAt: 2010-10-04 18:37:24 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 18:38:34 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 70.8 seconds
RetCode: 0
Status:  OK  
CheckDir: GraphAT.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/GraphAT.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GraphAT/DESCRIPTION' ... OK
* this is package 'GraphAT' version '1.20.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GraphAT' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: depthmat.Rd:28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

GraphAT.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'GraphAT' ...
** R
** data
** preparing package for lazy loading
Loading required package: coda
Loading required package: lattice
Loading required package: MASS
##
## Markov Chain Monte Carlo Package (MCMCpack)
## Copyright (C) 2003-2010 Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park
##
## Support provided by the U.S. National Science Foundation
## (Grants SES-0350646 and SES-0350613)
##
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GraphAT)

GraphAT.Rcheck/GraphAT-Ex.timings:

nameusersystemelapsed
Phenoclusters1.520.111.64
causton0.590.030.63
cellcycle1.100.051.15
clust2Mat000
depthmat1.360.001.36
getpvalue000
giaever0.590.020.61
mRNAclusters1.110.251.38
makeClustM000
mat2UndirG0.030.000.03
permPower1.060.011.08
perms000