Package: xmapbridge

Version: 1.5.0

Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes xmapbridge_1.5.0.tar.gz

StartedAt: 2009-12-07 19:04:52 -0800 (Mon, 07 Dec 2009)

EndedAt: 2009-12-07 19:05:27 -0800 (Mon, 07 Dec 2009)

EllapsedTime: 34.8 seconds

RetCode: 0

Status: OK

CheckDir: xmapbridge.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/xmapbridge.Rcheck'
* using R version 2.11.0 Under development (unstable) (2009-11-30 r50622)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'xmapbridge/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'xmapbridge' version '1.5.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'xmapbridge' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking tests ...
  Running ‘doRUnit.R’
  Running ‘xmapbridge_test.R’
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package ‘xmapbridge’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic for "show" in package "xmapbridge"
    (the supplied definition differs from and overrides the implicit generic
    in package "methods": Signatures differ:  (object), (object))
** help
*** installing help indices
** building package indices ...
* DONE (xmapbridge)