VanillaICE 1.9.1
Robert Scharpf
| Bioconductor Changelog | | Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE | | Last Changed Rev: 42890 / Revision: 43434 | | Last Changed Date: 2009-11-10 02:52:22 -0800 (Tue, 10 Nov 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| pitt | Mac OS X Tiger (10.4.11) / i386 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | [ ERROR ] | skipped | skipped |
* checking for file 'VanillaICE/DESCRIPTION' ... OK
* preparing 'VanillaICE':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package ‘VanillaICE’ ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c viterbi.c -o viterbi.o
viterbi.c: In function ‘viterbi’:
viterbi.c:55: warning: unused variable ‘tp’
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o VanillaICE.so viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c viterbi.c -o viterbi.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o VanillaICE.so viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c viterbi.c -o viterbi.o
viterbi.c: In function ‘viterbi’:
viterbi.c:55: warning: unused variable ‘tp’
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o VanillaICE.so viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "calculateEmission" no definition for class: “SnpCopyNumberSet”
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "calculateEmission" no definition for class: “SnpCallSet”
Creating a new generic function for "update" in "VanillaICE"
** help
*** installing help indices
** building package indices ...
* DONE (VanillaICE)
* creating vignettes ... ERROR
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Welcome to oligoClasses version 1.9.14
Error: processing vignette 'VanillaICE.Rnw' failed with diagnostics:
chunk 2 (label=createLocusSet)
Error in `sampleNames<-`(`*tmp*`, value = "NA06993") :
'value' length (1) must equal sample number in AssayData (1)
Execution halted