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Package 319/354HostnameOS / ArchBUILDCHECKBUILD BIN
SMAP 1.11.1
Robin Andersson
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SMAP
Last Changed Rev: 42737 / Revision: 43434
Last Changed Date: 2009-10-29 14:46:41 -0700 (Thu, 29 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: SMAP
Version: 1.11.1
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes SMAP_1.11.1.tar.gz
StartedAt: 2009-12-07 18:32:30 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 18:33:24 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 53.7 seconds
RetCode: 0
Status: OK
CheckDir: SMAP.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/SMAP.Rcheck'
* using R version 2.11.0 Under development (unstable) (2009-10-22 r50179)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SMAP/DESCRIPTION' ... OK
* this is package 'SMAP' version '1.11.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SMAP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

SMAP.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'SMAP' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gradient.c -o gradient.o
gradient.c: In function 'hmm_update':
gradient.c:247: warning: unused variable 'tmp'
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include"        -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include"        -O3 -Wall  -std=gnu99 -c overlap.c -o overlap.o
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include"        -O3 -Wall  -std=gnu99 -c prob.c -o prob.o
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include"        -O3 -Wall  -std=gnu99 -c viterbi.c -o viterbi.o
gcc -shared -s -o SMAP.dll tmp.def gradient.o init.o overlap.o prob.o viterbi.o -Le:/biocbld/bbs-2.6-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "SMAP"
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (SMAP)