Starr 1.2.11
Benedikt Zacher
| Snapshot Date: 2010-04-02 23:28:25 -0700 (Fri, 02 Apr 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/Starr | | Last Changed Rev: 44063 / Revision: 45705 | | Last Changed Date: 2010-01-19 05:48:19 -0800 (Tue, 19 Jan 2010) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | [ OK ] |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
INSTALLATION WITH 'R CMD INSTALL --preclean --library=Starr.buildbin-libdir Starr_1.2.11.tar.gz'
* installing *source* package ‘Starr’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -c ahocorasick.c -o ahocorasick.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -c collect.c -o collect.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -c fixed_gen_dist2.c -o fixed_gen_dist2.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -c rm_small_peak.c -o rm_small_peak.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -c sort_by_genomic.c -o sort_by_genomic.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Starr.so ahocorasick.o collect.o fixed_gen_dist2.o rm_small_peak.o sort_by_genomic.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: RColorBrewer
Loading required package: limma
Loading required package: Matrix
Loading required package: lattice
Loading required package: grid
Attaching package: 'affy'
The following object(s) are masked from package:Ringo :
probes
** help
*** installing help indices
** building package indices ...
* DONE (Starr)
INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=Starr.buildbin-libdir --libs-only Starr_1.2.11.tar.gz'
* installing *source* package ‘Starr’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -c ahocorasick.c -o ahocorasick.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -c collect.c -o collect.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -c fixed_gen_dist2.c -o fixed_gen_dist2.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -c rm_small_peak.c -o rm_small_peak.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -c sort_by_genomic.c -o sort_by_genomic.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Starr.so ahocorasick.o collect.o fixed_gen_dist2.o rm_small_peak.o sort_by_genomic.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
* DONE (Starr)