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Package 308/353HostnameOS / ArchBUILDCHECKBUILD BIN
seqLogo 1.12.0
Oliver Bembom
Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/seqLogo
Last Changed Rev: 42684 / Revision: 43539
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: seqLogo
Version: 1.12.0
Command: E:\biocbld\bbs-2.5-bioc\R\bin\R.exe CMD check --no-vignettes seqLogo_1.12.0.tar.gz
StartedAt: 2009-12-14 06:28:25 -0800 (Mon, 14 Dec 2009)
EndedAt: 2009-12-14 06:28:50 -0800 (Mon, 14 Dec 2009)
EllapsedTime: 24.4 seconds
RetCode: 0
Status: OK
CheckDir: seqLogo.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/seqLogo.Rcheck'
* using R version 2.10.0 (2009-10-26)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'seqLogo/DESCRIPTION' ... OK
* this is package 'seqLogo' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'seqLogo' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: makePWM.Rd:17-18: Dropping empty section \details
prepare_Rd: makePWM.Rd:25-26: Dropping empty section \seealso
prepare_Rd: pwm-class.Rd:49: Dropping empty section \note
prepare_Rd: pwm-class.Rd:46: Dropping empty section \references
prepare_Rd: pwm-class.Rd:52-53: Dropping empty section \seealso
prepare_Rd: pwm-class.Rd:54-55: Dropping empty section \examples
prepare_Rd: seqLogo.Rd:34: Dropping empty section \note
prepare_Rd: seqLogo.Rd:32: Dropping empty section \references
prepare_Rd: seqLogo.Rd:36: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

seqLogo.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'seqLogo' ...
** R
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "seqLogo"
Creating a new generic function for "summary" in "seqLogo"
Creating a new generic function for "print" in "seqLogo"
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (seqLogo)