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hgu2beta7 1.2.2
Biocore Team c/o BioC user list
Snapshot Date: 2009-08-10 00:27:00 -0700 (Mon, 10 Aug 2009)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/hgu2beta7
Last Changed Rev: 782 / Revision: 938
Last Changed Date: 2009-05-08 12:29:52 -0700 (Fri, 08 May 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.7) / i386  OK  OK  OK 
Package: hgu2beta7
Version: 1.2.2
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes hgu2beta7_1.2.2.tar.gz
StartedAt: 2009-08-10 01:44:17 -0700 (Mon, 10 Aug 2009)
EndedAt: 2009-08-10 01:46:32 -0700 (Mon, 10 Aug 2009)
EllapsedTime: 134.8 seconds
RetCode: 0
Status: OK
CheckDir: hgu2beta7.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-data-experiment/meat/hgu2beta7.Rcheck'
* using R version 2.9.1 Patched (2009-06-28 r48863)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'hgu2beta7/DESCRIPTION' ... OK
* this is package 'hgu2beta7' version '1.2.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hgu2beta7' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

hgu2beta7.Rcheck/00install.out:

* Installing *source* package 'hgu2beta7' ...
** R
** data
**  moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'hgu2beta7'
     Formats: text html latex example 
  hgu2beta7                         text    html    latex
  hgu2beta7ACCNUM                   text    html    latex   example
  hgu2beta7CHR                      text    html    latex   example
  hgu2beta7CHRLENGTHS               text    html    latex   example
  hgu2beta7CHRLOC                   text    html    latex   example
  hgu2beta7ENZYME                   text    html    latex   example
  hgu2beta7ENZYME2PROBE             text    html    latex   example
  hgu2beta7GENENAME                 text    html    latex   example
  hgu2beta7GO                       text    html    latex   example
  hgu2beta7GO2ALLPROBES             text    html    latex   example
  hgu2beta7GO2PROBE                 text    html    latex   example
  hgu2beta7GRIF                     text    html    latex   example
  hgu2beta7LOCUSID                  text    html    latex   example
  hgu2beta7MAP                      text    html    latex   example
  hgu2beta7OMIM                     text    html    latex   example
  hgu2beta7ORGANISM                 text    html    latex   example
  hgu2beta7PATH                     text    html    latex   example
  hgu2beta7PATH2PROBE               text    html    latex   example
  hgu2beta7PMID                     text    html    latex   example
  hgu2beta7PMID2PROBE               text    html    latex   example
  hgu2beta7QC                       text    html    latex
  hgu2beta7REFSEQ                   text    html    latex   example
  hgu2beta7SUMFUNC                  text    html    latex   example
  hgu2beta7SYMBOL                   text    html    latex   example
  hgu2beta7UNIGENE                  text    html    latex   example
** building package indices ...
* DONE (hgu2beta7)