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Package 318/319HostnameOS / ArchBUILDCHECKBUILD BIN
xps 1.4.10
Christian Stratowa
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/xps
Last Changed Rev: 42355 / Revision: 42512
Last Changed Date: 2009-10-13 11:33:42 -0700 (Tue, 13 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  ERROR 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
Package: xps
Version: 1.4.10
Command: /Users/biocbuild/BBS/utils/build-universal.sh xps_1.4.10.tar.gz /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R xps.buildbin-libdir
StartedAt: 2009-10-20 19:36:37 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:45:10 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 513.1 seconds
RetCode: 0
Status: OK
PackageFile: xps_1.4.10.tgz
PackageFileSize: 7.372 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=xps.buildbin-libdir xps_1.4.10.tar.gz'

* Installing *source* package ‘xps’ ...
checking for gcc... gcc-4.2 -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch i386 -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch i386 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc-4.2 -arch i386 -std=gnu99 -E
checking for gcc... (cached) gcc-4.2 -arch i386 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc-4.2 -arch i386 -std=gnu99 accepts -g... (cached) yes
checking for gcc-4.2 -arch i386 -std=gnu99 option to accept ANSI C... (cached) none needed
checking for root-config... yes
found ROOT version 5.22/00 in directory /usr/local
** libs
** arch - i386
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c TMLMath.cxx
TMLMath.cxx:1109:1: warning: "xmax" redefined
TMLMath.cxx:1060:1: warning: this is the location of the previous definition
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c TStat.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c StatUtils.cxx
StatUtils.cxx:240: warning: unused parameter ‘df’
StatUtils.cxx:264: warning: unused parameter ‘df’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSBase.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSUtils.cxx
XPSUtils.cxx:1323: warning: unused parameter ‘canvasname’
XPSUtils.cxx:1323: warning: unused parameter ‘treename’
XPSUtils.cxx:1323: warning: unused parameter ‘varexp’
XPSUtils.cxx:1323: warning: unused parameter ‘selection’
XPSUtils.cxx:1323: warning: unused parameter ‘opt’
XPSUtils.cxx:1712: warning: unused parameter ‘min’
XPSUtils.cxx:1712: warning: unused parameter ‘max’
XPSUtils.cxx:2107: warning: unused parameter ‘n’
XPSUtils.cxx:2107: warning: unused parameter ‘x’
XPSUtils.cxx:2107: warning: unused parameter ‘y’
XPSUtils.cxx:2107: warning: unused parameter ‘z’
XPSUtils.cxx:2107: warning: unused parameter ‘opt’
XPSUtils.cxx:2615: warning: unused parameter ‘index’
XPSUtils.cxx:3068: warning: unused parameter ‘n’
XPSUtils.cxx:3068: warning: unused parameter ‘colors’
XPSUtils.cxx:3068: warning: unused parameter ‘priority’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSSchemes.cxx
XPSSchemes.cxx:9992: warning: unused parameter ‘index’
XPSSchemes.cxx:10003: warning: unused parameter ‘index’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSDataTypes.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSProjectHandler.cxx
In file included from XPSProjectHandler.cxx:47:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSData.cxx
In file included from XPSData.h:47,
                 from XPSData.cxx:77:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSData.cxx:77:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSData.cxx:494: warning: unused parameter ‘name’
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1742: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXDAData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1936: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXMLHeader(std::ifstream&, const char*, char)’:
XPSData.cxx:2468: warning: unused variable ‘fNMasked’
XPSData.cxx:2478: warning: unused variable ‘fNOutlier’
XPSData.cxx:2488: warning: unused variable ‘fNModified’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSProcessing.cxx:744: warning: unused parameter ‘name’
XPSProcessing.cxx:1233: warning: unused parameter ‘unit’
XPSProcessing.cxx:1233: warning: unused parameter ‘type’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSHybridizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:53:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:53:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSHybridizer.cxx:1529: warning: unused parameter ‘num’
XPSHybridizer.cxx:1642: warning: unused parameter ‘num’
XPSHybridizer.cxx:1825: warning: unused parameter ‘value1’
XPSHybridizer.cxx:1825: warning: unused parameter ‘value2’
XPSHybridizer.cxx:1825: warning: unused parameter ‘num’
XPSHybridizer.cxx:1949: warning: unused parameter ‘num’
XPSHybridizer.cxx:2209: warning: unused parameter ‘msk’
XPSHybridizer.cxx:2253: warning: unused parameter ‘x’
XPSHybridizer.cxx:2253: warning: unused parameter ‘scale’
XPSHybridizer.cxx:2441: warning: unused parameter ‘x’
XPSHybridizer.cxx:2441: warning: unused parameter ‘scale’
XPSHybridizer.cxx:3493: warning: unused parameter ‘msk’
XPSHybridizer.cxx:3594: warning: unused parameter ‘msk’
XPSHybridizer.cxx:4169: warning: unused parameter ‘msk’
XPSHybridizer.cxx: In member function ‘Double_t XDetectionCall::WilcoxTest(Int_t, Double_t*, Double_t)’:
XPSHybridizer.cxx:1723: warning: ‘pval’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSSelector.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:51:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:51:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSSelector.cxx:315: warning: unused parameter ‘max’
XPSSelector.cxx:315: warning: unused parameter ‘showGraph’
XPSSelector.cxx: In member function ‘Double_t XRankSelector::Cutoff(Int_t, const Double_t*, Double_t, Bool_t)’:
XPSSelector.cxx:333: warning: ‘par0’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSNormalizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSNormalizer.cxx:516: warning: unused parameter ‘xout’
XPSNormalizer.cxx:593: warning: unused parameter ‘xout’
XPSNormalizer.cxx:672: warning: unused parameter ‘xout’
XPSNormalizer.cxx:1088: warning: unused parameter ‘n’
XPSNormalizer.cxx:1088: warning: unused parameter ‘x’
XPSNormalizer.cxx:1088: warning: unused parameter ‘msk’
XPSNormalizer.cxx: In member function ‘virtual Int_t XNormalizer::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’:
XPSNormalizer.cxx:239: warning: ‘his2sel’ may be used uninitialized in this function
XPSNormalizer.cxx:238: warning: ‘his2all’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSPreProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:85:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:85:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSPreProcessing.cxx:85:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipCall(Int_t, TTree**, Int_t&, TTree**, TFile*)’:
XPSPreProcessing.cxx:2679: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:3548: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:4822: warning: unused parameter ‘bgrd’
XPSPreProcessing.cxx:4822: warning: unused parameter ‘bgdev’
XPSPreProcessing.cxx:4859: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:4879: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:5201: warning: unused parameter ‘nrow’
XPSPreProcessing.cxx: In member function ‘virtual TTree* XExonProcesSet::SchemeTree(XAlgorithm*, void*, TLeaf**)’:
XPSPreProcessing.cxx:5838: warning: unused variable ‘scheme_ptr_ptr’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSNormation.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSNormation.cxx:70:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSNormation.cxx:182: warning: unused parameter ‘infile’
XPSNormation.cxx:988: warning: unused parameter ‘method’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSFilter.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:42:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSFilter.cxx:42:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.cxx:619: warning: unused parameter ‘sepo’
XPSFilter.cxx:1347: warning: unused parameter ‘table’
XPSFilter.cxx:1626: warning: unused parameter ‘infile’
XPSFilter.cxx:1626: warning: unused parameter ‘outfile’
XPSFilter.cxx:1626: warning: unused parameter ‘varlist’
XPSFilter.cxx:1626: warning: unused parameter ‘nrows’
XPSFilter.cxx:1626: warning: unused parameter ‘sepi’
XPSFilter.cxx:1626: warning: unused parameter ‘sepo’
XPSFilter.cxx:1626: warning: unused parameter ‘delim’
XPSFilter.cxx: In member function ‘virtual Int_t XUniFilter::Calculate(TTree*, const char*, TTree*, const char*, Int_t)’:
XPSFilter.cxx:1800: warning: unused variable ‘id’
XPSFilter.cxx: At global scope:
XPSFilter.cxx:1653: warning: unused parameter ‘leafname’
XPSFilter.cxx:1834: warning: unused parameter ‘outtree’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSAnalyzer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSAnalyzer.cxx:213: warning: unused parameter ‘type’
XPSAnalyzer.cxx:213: warning: unused parameter ‘options’
XPSAnalyzer.cxx:213: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:213: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:227: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:227: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:227: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:227: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:239: warning: unused parameter ‘n’
XPSAnalyzer.cxx:239: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:239: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:239: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:239: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:239: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:288: warning: unused parameter ‘type’
XPSAnalyzer.cxx:288: warning: unused parameter ‘options’
XPSAnalyzer.cxx:288: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:288: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:302: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:302: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:302: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:302: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:314: warning: unused parameter ‘n’
XPSAnalyzer.cxx:314: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:314: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:314: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:314: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:314: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:363: warning: unused parameter ‘type’
XPSAnalyzer.cxx:363: warning: unused parameter ‘options’
XPSAnalyzer.cxx:363: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:363: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:377: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:377: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:377: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:377: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:389: warning: unused parameter ‘n’
XPSAnalyzer.cxx:389: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:389: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:389: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:389: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:389: warning: unused parameter ‘mu’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSAnalysis.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSAnalysis.cxx:64:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSAnalysis.cxx:266: warning: unused parameter ‘infile’
XPSAnalysis.cxx:444: warning: unused parameter ‘type’
XPSAnalysis.cxx:964: warning: unused parameter ‘ntree’
XPSAnalysis.cxx:964: warning: unused parameter ‘tree’
XPSAnalysis.cxx:964: warning: unused parameter ‘n’
XPSAnalysis.cxx:964: warning: unused parameter ‘msk’
XPSAnalysis.cxx:1703: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1703: warning: unused parameter ‘n’
XPSAnalysis.cxx:1703: warning: unused parameter ‘names’
XPSAnalysis.cxx:1703: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1703: warning: unused parameter ‘output’
XPSAnalysis.cxx:1703: warning: unused parameter ‘sep’
XPSAnalysis.cxx:1995: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1995: warning: unused parameter ‘n’
XPSAnalysis.cxx:1995: warning: unused parameter ‘names’
XPSAnalysis.cxx:1995: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1995: warning: unused parameter ‘output’
XPSAnalysis.cxx:1995: warning: unused parameter ‘sep’
XPSAnalysis.cxx: In member function ‘virtual Int_t XUnivarSet::ExportUnivarTrees(Int_t, TString*, const char*, std::ofstream&, const char*)’:
XPSAnalysis.cxx:2189: warning: unused variable ‘option’
XPSAnalysis.cxx: At global scope:
XPSAnalysis.cxx:2698: warning: unused parameter ‘n’
XPSAnalysis.cxx:2698: warning: unused parameter ‘tree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2835: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2863: warning: unused parameter ‘n’
XPSAnalysis.cxx:2863: warning: unused parameter ‘names’
XPSAnalysis.cxx:2863: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘output’
XPSAnalysis.cxx:2863: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2911: warning: unused parameter ‘n’
XPSAnalysis.cxx:2911: warning: unused parameter ‘names’
XPSAnalysis.cxx:2911: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2911: warning: unused parameter ‘output’
XPSAnalysis.cxx:2911: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2980: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2980: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2980: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3008: warning: unused parameter ‘n’
XPSAnalysis.cxx:3008: warning: unused parameter ‘names’
XPSAnalysis.cxx:3008: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘output’
XPSAnalysis.cxx:3008: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3050: warning: unused parameter ‘n’
XPSAnalysis.cxx:3050: warning: unused parameter ‘names’
XPSAnalysis.cxx:3050: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3050: warning: unused parameter ‘output’
XPSAnalysis.cxx:3050: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3119: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:3119: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:3119: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3147: warning: unused parameter ‘n’
XPSAnalysis.cxx:3147: warning: unused parameter ‘names’
XPSAnalysis.cxx:3147: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘output’
XPSAnalysis.cxx:3147: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3189: warning: unused parameter ‘n’
XPSAnalysis.cxx:3189: warning: unused parameter ‘names’
XPSAnalysis.cxx:3189: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3189: warning: unused parameter ‘output’
XPSAnalysis.cxx:3189: warning: unused parameter ‘sep’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c rwrapper.cxx
In file included from XPSData.h:47,
                 from rwrapper.cxx:29:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from rwrapper.cxx:29:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from rwrapper.cxx:30:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from rwrapper.cxx:31:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
rwrapper.cxx:1387: warning: unused parameter ‘level’
Generating dictionary xpsDict.cxx...
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c xpsDict.cxx
In file included from xpsDict.h:40,
                 from xpsDict.cxx:16:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from xpsDict.h:41,
                 from xpsDict.cxx:16:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from xpsDict.h:46,
                 from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:47,
                 from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:48,
                 from xpsDict.cxx:16:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
MACOSX_DEPLOYMENT_TARGET=10.5 c++ -dynamiclib -single_module -undefined dynamic_lookup TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/lib/root -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lfreetype -lGui -pthread -lm -ldl  -lRIO -lGed -lTreePlayer -lTreeViewer -o  xps.dylib 
ln -sf xps.dylib xps.so
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'xps'
     Formats: text html latex example 
  AnalysisTreeSet-class             text    html    latex   example
  CallTreeSet-class                 text    html    latex   example
  DataTreeSet-class                 text    html    latex   example
  ExprTreeSet-class                 text    html    latex   example
  Filter-class                      text    html    latex   example
  FilterTreeSet-class               text    html    latex   example
  PreFilter-class                   text    html    latex   example
  PreFilter-constructor             text    html    latex   example
  ProcesSet-class                   text    html    latex   example
  ProjectInfo-class                 text    html    latex   example
  ProjectInfo-constructor           text    html    latex   example
  ROOT                              text    html    latex
  SchemeTreeSet-class               text    html    latex   example
  TreeSet-class                     text    html    latex   example
  UniFilter-class                   text    html    latex   example
  UniFilter-constructor             text    html    latex   example
  addData-methods                   text    html    latex   example
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  attachMask-methods                text    html    latex   example
  bgcorrect                         text    html    latex   example
  boxplot-methods                   text    html    latex   example
  boxplot.dev                       text    html    latex
  callFilter-methods                text    html    latex   example
  callplot-methods                  text    html    latex
  cvFilter-methods                  text    html    latex   example
  dabg.call                         text    html    latex   example
  dfw                               text    html    latex   example
  diffFilter-methods                text    html    latex   example
  existsROOTFile                    text    html    latex   example
  exonLevel                         text    html    latex   example
  export                            text    html    latex   example
  export.filter                     text    html    latex
  export.root                       text    html    latex   example
  express                           text    html    latex   example
  exprs-methods                     text    html    latex   example
  farms                             text    html    latex   example
  fcFilter-methods                  text    html    latex   example
  gapFilter-methods                 text    html    latex   example
  getChipName                       text    html    latex   example
  getChipType                       text    html    latex   example
  getDatatype                       text    html    latex   example
  getNameType                       text    html    latex   example
  getNumberTrees                    text    html    latex   example
  getProbeInfo                      text    html    latex   example
  getTreeData-methods               text    html    latex
  getTreeNames                      text    html    latex   example
  highFilter-methods                text    html    latex   example
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  ini.call                          text    html    latex   example
  initialize-methods                text    html    latex
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  isROOTFile                        text    html    latex   example
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  mboxplot-methods                  text    html    latex   example
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  pm-methods                        text    html    latex   example
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  root.merge.data                   text    html    latex   example
  root.mvaplot                      text    html    latex   example
  root.profile                      text    html    latex   example
  root.scheme                       text    html    latex   example
  summarize                         text    html    latex   example
  type2Exten                        text    html    latex   example
  uniTest-methods                   text    html    latex   example
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  validTreetype                     text    html    latex   example
  varFilter-methods                 text    html    latex   example
  volcanoplot-methods               text    html    latex
  xps-package                       text    html    latex
  xpsOptions                        text    html    latex
** building package indices ...
* DONE (xps)

                INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=xps.buildbin-libdir --libs-only xps_1.4.10.tar.gz'

* Installing *source* package ‘xps’ ...
checking for gcc... gcc-4.2 -arch ppc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch ppc -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch ppc -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc-4.2 -arch ppc -std=gnu99 -E
checking for gcc... (cached) gcc-4.2 -arch ppc -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc-4.2 -arch ppc -std=gnu99 accepts -g... (cached) yes
checking for gcc-4.2 -arch ppc -std=gnu99 option to accept ANSI C... (cached) none needed
checking for root-config... yes
found ROOT version 5.22/00 in directory /usr/local
** libs
** arch - ppc
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c TMLMath.cxx
TMLMath.cxx:1109:1: warning: "xmax" redefined
TMLMath.cxx:1060:1: warning: this is the location of the previous definition
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c TStat.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c StatUtils.cxx
StatUtils.cxx:240: warning: unused parameter ‘df’
StatUtils.cxx:264: warning: unused parameter ‘df’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSBase.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSUtils.cxx
XPSUtils.cxx:1323: warning: unused parameter ‘canvasname’
XPSUtils.cxx:1323: warning: unused parameter ‘treename’
XPSUtils.cxx:1323: warning: unused parameter ‘varexp’
XPSUtils.cxx:1323: warning: unused parameter ‘selection’
XPSUtils.cxx:1323: warning: unused parameter ‘opt’
XPSUtils.cxx:1712: warning: unused parameter ‘min’
XPSUtils.cxx:1712: warning: unused parameter ‘max’
XPSUtils.cxx:2107: warning: unused parameter ‘n’
XPSUtils.cxx:2107: warning: unused parameter ‘x’
XPSUtils.cxx:2107: warning: unused parameter ‘y’
XPSUtils.cxx:2107: warning: unused parameter ‘z’
XPSUtils.cxx:2107: warning: unused parameter ‘opt’
XPSUtils.cxx:2615: warning: unused parameter ‘index’
XPSUtils.cxx:3068: warning: unused parameter ‘n’
XPSUtils.cxx:3068: warning: unused parameter ‘colors’
XPSUtils.cxx:3068: warning: unused parameter ‘priority’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSSchemes.cxx
XPSSchemes.cxx:9992: warning: unused parameter ‘index’
XPSSchemes.cxx:10003: warning: unused parameter ‘index’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSDataTypes.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSProjectHandler.cxx
In file included from XPSProjectHandler.cxx:47:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSData.cxx
In file included from XPSData.h:47,
                 from XPSData.cxx:77:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSData.cxx:77:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSData.cxx:494: warning: unused parameter ‘name’
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1742: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXDAData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1936: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXMLHeader(std::ifstream&, const char*, char)’:
XPSData.cxx:2468: warning: unused variable ‘fNMasked’
XPSData.cxx:2478: warning: unused variable ‘fNOutlier’
XPSData.cxx:2488: warning: unused variable ‘fNModified’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSProcessing.cxx:744: warning: unused parameter ‘name’
XPSProcessing.cxx:1233: warning: unused parameter ‘unit’
XPSProcessing.cxx:1233: warning: unused parameter ‘type’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSHybridizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:53:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:53:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSHybridizer.cxx:1529: warning: unused parameter ‘num’
XPSHybridizer.cxx:1642: warning: unused parameter ‘num’
XPSHybridizer.cxx:1825: warning: unused parameter ‘value1’
XPSHybridizer.cxx:1825: warning: unused parameter ‘value2’
XPSHybridizer.cxx:1825: warning: unused parameter ‘num’
XPSHybridizer.cxx:1949: warning: unused parameter ‘num’
XPSHybridizer.cxx:2209: warning: unused parameter ‘msk’
XPSHybridizer.cxx:2253: warning: unused parameter ‘x’
XPSHybridizer.cxx:2253: warning: unused parameter ‘scale’
XPSHybridizer.cxx:2441: warning: unused parameter ‘x’
XPSHybridizer.cxx:2441: warning: unused parameter ‘scale’
XPSHybridizer.cxx:3493: warning: unused parameter ‘msk’
XPSHybridizer.cxx:3594: warning: unused parameter ‘msk’
XPSHybridizer.cxx:4169: warning: unused parameter ‘msk’
XPSHybridizer.cxx: In member function ‘Double_t XDetectionCall::WilcoxTest(Int_t, Double_t*, Double_t)’:
XPSHybridizer.cxx:1723: warning: ‘pval’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSSelector.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:51:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:51:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSSelector.cxx:315: warning: unused parameter ‘max’
XPSSelector.cxx:315: warning: unused parameter ‘showGraph’
XPSSelector.cxx: In member function ‘Double_t XRankSelector::Cutoff(Int_t, const Double_t*, Double_t, Bool_t)’:
XPSSelector.cxx:333: warning: ‘par0’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSNormalizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSNormalizer.cxx:516: warning: unused parameter ‘xout’
XPSNormalizer.cxx:593: warning: unused parameter ‘xout’
XPSNormalizer.cxx:672: warning: unused parameter ‘xout’
XPSNormalizer.cxx:1088: warning: unused parameter ‘n’
XPSNormalizer.cxx:1088: warning: unused parameter ‘x’
XPSNormalizer.cxx:1088: warning: unused parameter ‘msk’
XPSNormalizer.cxx: In member function ‘virtual Int_t XNormalizer::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’:
XPSNormalizer.cxx:239: warning: ‘his2sel’ may be used uninitialized in this function
XPSNormalizer.cxx:238: warning: ‘his2all’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSPreProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:85:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:85:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSPreProcessing.cxx:85:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipCall(Int_t, TTree**, Int_t&, TTree**, TFile*)’:
XPSPreProcessing.cxx:2679: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:3548: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:4822: warning: unused parameter ‘bgrd’
XPSPreProcessing.cxx:4822: warning: unused parameter ‘bgdev’
XPSPreProcessing.cxx:4859: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:4879: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:5201: warning: unused parameter ‘nrow’
XPSPreProcessing.cxx: In member function ‘virtual TTree* XExonProcesSet::SchemeTree(XAlgorithm*, void*, TLeaf**)’:
XPSPreProcessing.cxx:5838: warning: unused variable ‘scheme_ptr_ptr’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSNormation.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSNormation.cxx:70:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSNormation.cxx:182: warning: unused parameter ‘infile’
XPSNormation.cxx:988: warning: unused parameter ‘method’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSFilter.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:42:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSFilter.cxx:42:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.cxx:619: warning: unused parameter ‘sepo’
XPSFilter.cxx:1347: warning: unused parameter ‘table’
XPSFilter.cxx:1626: warning: unused parameter ‘infile’
XPSFilter.cxx:1626: warning: unused parameter ‘outfile’
XPSFilter.cxx:1626: warning: unused parameter ‘varlist’
XPSFilter.cxx:1626: warning: unused parameter ‘nrows’
XPSFilter.cxx:1626: warning: unused parameter ‘sepi’
XPSFilter.cxx:1626: warning: unused parameter ‘sepo’
XPSFilter.cxx:1626: warning: unused parameter ‘delim’
XPSFilter.cxx: In member function ‘virtual Int_t XUniFilter::Calculate(TTree*, const char*, TTree*, const char*, Int_t)’:
XPSFilter.cxx:1800: warning: unused variable ‘id’
XPSFilter.cxx: At global scope:
XPSFilter.cxx:1653: warning: unused parameter ‘leafname’
XPSFilter.cxx:1834: warning: unused parameter ‘outtree’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSAnalyzer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSAnalyzer.cxx:213: warning: unused parameter ‘type’
XPSAnalyzer.cxx:213: warning: unused parameter ‘options’
XPSAnalyzer.cxx:213: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:213: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:227: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:227: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:227: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:227: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:239: warning: unused parameter ‘n’
XPSAnalyzer.cxx:239: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:239: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:239: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:239: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:239: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:288: warning: unused parameter ‘type’
XPSAnalyzer.cxx:288: warning: unused parameter ‘options’
XPSAnalyzer.cxx:288: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:288: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:302: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:302: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:302: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:302: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:314: warning: unused parameter ‘n’
XPSAnalyzer.cxx:314: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:314: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:314: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:314: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:314: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:363: warning: unused parameter ‘type’
XPSAnalyzer.cxx:363: warning: unused parameter ‘options’
XPSAnalyzer.cxx:363: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:363: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:377: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:377: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:377: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:377: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:389: warning: unused parameter ‘n’
XPSAnalyzer.cxx:389: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:389: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:389: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:389: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:389: warning: unused parameter ‘mu’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSAnalysis.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSAnalysis.cxx:64:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSAnalysis.cxx:266: warning: unused parameter ‘infile’
XPSAnalysis.cxx:444: warning: unused parameter ‘type’
XPSAnalysis.cxx:964: warning: unused parameter ‘ntree’
XPSAnalysis.cxx:964: warning: unused parameter ‘tree’
XPSAnalysis.cxx:964: warning: unused parameter ‘n’
XPSAnalysis.cxx:964: warning: unused parameter ‘msk’
XPSAnalysis.cxx:1703: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1703: warning: unused parameter ‘n’
XPSAnalysis.cxx:1703: warning: unused parameter ‘names’
XPSAnalysis.cxx:1703: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1703: warning: unused parameter ‘output’
XPSAnalysis.cxx:1703: warning: unused parameter ‘sep’
XPSAnalysis.cxx:1995: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1995: warning: unused parameter ‘n’
XPSAnalysis.cxx:1995: warning: unused parameter ‘names’
XPSAnalysis.cxx:1995: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1995: warning: unused parameter ‘output’
XPSAnalysis.cxx:1995: warning: unused parameter ‘sep’
XPSAnalysis.cxx: In member function ‘virtual Int_t XUnivarSet::ExportUnivarTrees(Int_t, TString*, const char*, std::ofstream&, const char*)’:
XPSAnalysis.cxx:2189: warning: unused variable ‘option’
XPSAnalysis.cxx: At global scope:
XPSAnalysis.cxx:2698: warning: unused parameter ‘n’
XPSAnalysis.cxx:2698: warning: unused parameter ‘tree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2835: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2863: warning: unused parameter ‘n’
XPSAnalysis.cxx:2863: warning: unused parameter ‘names’
XPSAnalysis.cxx:2863: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘output’
XPSAnalysis.cxx:2863: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2911: warning: unused parameter ‘n’
XPSAnalysis.cxx:2911: warning: unused parameter ‘names’
XPSAnalysis.cxx:2911: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2911: warning: unused parameter ‘output’
XPSAnalysis.cxx:2911: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2980: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2980: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2980: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3008: warning: unused parameter ‘n’
XPSAnalysis.cxx:3008: warning: unused parameter ‘names’
XPSAnalysis.cxx:3008: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘output’
XPSAnalysis.cxx:3008: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3050: warning: unused parameter ‘n’
XPSAnalysis.cxx:3050: warning: unused parameter ‘names’
XPSAnalysis.cxx:3050: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3050: warning: unused parameter ‘output’
XPSAnalysis.cxx:3050: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3119: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:3119: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:3119: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3147: warning: unused parameter ‘n’
XPSAnalysis.cxx:3147: warning: unused parameter ‘names’
XPSAnalysis.cxx:3147: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘output’
XPSAnalysis.cxx:3147: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3189: warning: unused parameter ‘n’
XPSAnalysis.cxx:3189: warning: unused parameter ‘names’
XPSAnalysis.cxx:3189: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3189: warning: unused parameter ‘output’
XPSAnalysis.cxx:3189: warning: unused parameter ‘sep’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c rwrapper.cxx
In file included from XPSData.h:47,
                 from rwrapper.cxx:29:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from rwrapper.cxx:29:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from rwrapper.cxx:30:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from rwrapper.cxx:31:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
rwrapper.cxx:1387: warning: unused parameter ‘level’
Generating dictionary xpsDict.cxx...
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c xpsDict.cxx
In file included from xpsDict.h:40,
                 from xpsDict.cxx:16:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from xpsDict.h:41,
                 from xpsDict.cxx:16:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from xpsDict.h:46,
                 from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:47,
                 from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:48,
                 from xpsDict.cxx:16:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
MACOSX_DEPLOYMENT_TARGET=10.5 c++ -dynamiclib -single_module -undefined dynamic_lookup TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/lib/root -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lfreetype -lGui -pthread -lm -ldl  -lRIO -lGed -lTreePlayer -lTreeViewer -o  xps.dylib 
ln -sf xps.dylib xps.so
* DONE (xps)

                INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --library=xps.buildbin-libdir --libs-only xps_1.4.10.tar.gz'

* Installing *source* package ‘xps’ ...
checking for gcc... gcc-4.2 -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc-4.2 -arch x86_64 -std=gnu99 -E
checking for gcc... (cached) gcc-4.2 -arch x86_64 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... (cached) yes
checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ANSI C... (cached) none needed
checking for root-config... yes
found ROOT version 5.22/00 in directory /usr/local
** libs
** arch - x86_64
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c TMLMath.cxx
TMLMath.cxx:1109:1: warning: "xmax" redefined
TMLMath.cxx:1060:1: warning: this is the location of the previous definition
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c TStat.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c StatUtils.cxx
StatUtils.cxx:240: warning: unused parameter ‘df’
StatUtils.cxx:264: warning: unused parameter ‘df’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSBase.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSUtils.cxx
XPSUtils.cxx:1323: warning: unused parameter ‘canvasname’
XPSUtils.cxx:1323: warning: unused parameter ‘treename’
XPSUtils.cxx:1323: warning: unused parameter ‘varexp’
XPSUtils.cxx:1323: warning: unused parameter ‘selection’
XPSUtils.cxx:1323: warning: unused parameter ‘opt’
XPSUtils.cxx:1712: warning: unused parameter ‘min’
XPSUtils.cxx:1712: warning: unused parameter ‘max’
XPSUtils.cxx:2107: warning: unused parameter ‘n’
XPSUtils.cxx:2107: warning: unused parameter ‘x’
XPSUtils.cxx:2107: warning: unused parameter ‘y’
XPSUtils.cxx:2107: warning: unused parameter ‘z’
XPSUtils.cxx:2107: warning: unused parameter ‘opt’
XPSUtils.cxx:2615: warning: unused parameter ‘index’
XPSUtils.cxx:3068: warning: unused parameter ‘n’
XPSUtils.cxx:3068: warning: unused parameter ‘colors’
XPSUtils.cxx:3068: warning: unused parameter ‘priority’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSSchemes.cxx
XPSSchemes.cxx:9992: warning: unused parameter ‘index’
XPSSchemes.cxx:10003: warning: unused parameter ‘index’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSDataTypes.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSProjectHandler.cxx
In file included from XPSProjectHandler.cxx:47:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSData.cxx
In file included from XPSData.h:47,
                 from XPSData.cxx:77:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSData.cxx:77:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSData.cxx:494: warning: unused parameter ‘name’
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1742: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXDAData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1936: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXMLHeader(std::ifstream&, const char*, char)’:
XPSData.cxx:2468: warning: unused variable ‘fNMasked’
XPSData.cxx:2478: warning: unused variable ‘fNOutlier’
XPSData.cxx:2488: warning: unused variable ‘fNModified’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSProcessing.cxx:744: warning: unused parameter ‘name’
XPSProcessing.cxx:1233: warning: unused parameter ‘unit’
XPSProcessing.cxx:1233: warning: unused parameter ‘type’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSHybridizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:53:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:53:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSHybridizer.cxx:1529: warning: unused parameter ‘num’
XPSHybridizer.cxx:1642: warning: unused parameter ‘num’
XPSHybridizer.cxx:1825: warning: unused parameter ‘value1’
XPSHybridizer.cxx:1825: warning: unused parameter ‘value2’
XPSHybridizer.cxx:1825: warning: unused parameter ‘num’
XPSHybridizer.cxx:1949: warning: unused parameter ‘num’
XPSHybridizer.cxx:2209: warning: unused parameter ‘msk’
XPSHybridizer.cxx:2253: warning: unused parameter ‘x’
XPSHybridizer.cxx:2253: warning: unused parameter ‘scale’
XPSHybridizer.cxx:2441: warning: unused parameter ‘x’
XPSHybridizer.cxx:2441: warning: unused parameter ‘scale’
XPSHybridizer.cxx:3493: warning: unused parameter ‘msk’
XPSHybridizer.cxx:3594: warning: unused parameter ‘msk’
XPSHybridizer.cxx:4169: warning: unused parameter ‘msk’
XPSHybridizer.cxx: In member function ‘Double_t XDetectionCall::WilcoxTest(Int_t, Double_t*, Double_t)’:
XPSHybridizer.cxx:1723: warning: ‘pval’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSSelector.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:51:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:51:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSSelector.cxx:315: warning: unused parameter ‘max’
XPSSelector.cxx:315: warning: unused parameter ‘showGraph’
XPSSelector.cxx: In member function ‘Double_t XRankSelector::Cutoff(Int_t, const Double_t*, Double_t, Bool_t)’:
XPSSelector.cxx:333: warning: ‘par0’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSNormalizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSNormalizer.cxx:516: warning: unused parameter ‘xout’
XPSNormalizer.cxx:593: warning: unused parameter ‘xout’
XPSNormalizer.cxx:672: warning: unused parameter ‘xout’
XPSNormalizer.cxx:1088: warning: unused parameter ‘n’
XPSNormalizer.cxx:1088: warning: unused parameter ‘x’
XPSNormalizer.cxx:1088: warning: unused parameter ‘msk’
XPSNormalizer.cxx: In member function ‘virtual Int_t XNormalizer::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’:
XPSNormalizer.cxx:239: warning: ‘his2sel’ may be used uninitialized in this function
XPSNormalizer.cxx:238: warning: ‘his2all’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSPreProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:85:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:85:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSPreProcessing.cxx:85:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipCall(Int_t, TTree**, Int_t&, TTree**, TFile*)’:
XPSPreProcessing.cxx:2679: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:3548: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:4822: warning: unused parameter ‘bgrd’
XPSPreProcessing.cxx:4822: warning: unused parameter ‘bgdev’
XPSPreProcessing.cxx:4859: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:4879: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:5201: warning: unused parameter ‘nrow’
XPSPreProcessing.cxx: In member function ‘virtual TTree* XExonProcesSet::SchemeTree(XAlgorithm*, void*, TLeaf**)’:
XPSPreProcessing.cxx:5838: warning: unused variable ‘scheme_ptr_ptr’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSNormation.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSNormation.cxx:70:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSNormation.cxx:182: warning: unused parameter ‘infile’
XPSNormation.cxx:988: warning: unused parameter ‘method’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSFilter.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:42:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSFilter.cxx:42:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.cxx:619: warning: unused parameter ‘sepo’
XPSFilter.cxx:1347: warning: unused parameter ‘table’
XPSFilter.cxx:1626: warning: unused parameter ‘infile’
XPSFilter.cxx:1626: warning: unused parameter ‘outfile’
XPSFilter.cxx:1626: warning: unused parameter ‘varlist’
XPSFilter.cxx:1626: warning: unused parameter ‘nrows’
XPSFilter.cxx:1626: warning: unused parameter ‘sepi’
XPSFilter.cxx:1626: warning: unused parameter ‘sepo’
XPSFilter.cxx:1626: warning: unused parameter ‘delim’
XPSFilter.cxx: In member function ‘virtual Int_t XUniFilter::Calculate(TTree*, const char*, TTree*, const char*, Int_t)’:
XPSFilter.cxx:1800: warning: unused variable ‘id’
XPSFilter.cxx: At global scope:
XPSFilter.cxx:1653: warning: unused parameter ‘leafname’
XPSFilter.cxx:1834: warning: unused parameter ‘outtree’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSAnalyzer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSAnalyzer.cxx:213: warning: unused parameter ‘type’
XPSAnalyzer.cxx:213: warning: unused parameter ‘options’
XPSAnalyzer.cxx:213: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:213: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:227: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:227: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:227: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:227: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:239: warning: unused parameter ‘n’
XPSAnalyzer.cxx:239: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:239: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:239: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:239: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:239: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:288: warning: unused parameter ‘type’
XPSAnalyzer.cxx:288: warning: unused parameter ‘options’
XPSAnalyzer.cxx:288: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:288: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:302: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:302: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:302: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:302: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:314: warning: unused parameter ‘n’
XPSAnalyzer.cxx:314: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:314: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:314: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:314: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:314: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:363: warning: unused parameter ‘type’
XPSAnalyzer.cxx:363: warning: unused parameter ‘options’
XPSAnalyzer.cxx:363: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:363: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:377: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:377: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:377: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:377: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:389: warning: unused parameter ‘n’
XPSAnalyzer.cxx:389: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:389: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:389: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:389: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:389: warning: unused parameter ‘mu’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSAnalysis.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSAnalysis.cxx:64:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSAnalysis.cxx:266: warning: unused parameter ‘infile’
XPSAnalysis.cxx:444: warning: unused parameter ‘type’
XPSAnalysis.cxx:964: warning: unused parameter ‘ntree’
XPSAnalysis.cxx:964: warning: unused parameter ‘tree’
XPSAnalysis.cxx:964: warning: unused parameter ‘n’
XPSAnalysis.cxx:964: warning: unused parameter ‘msk’
XPSAnalysis.cxx:1703: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1703: warning: unused parameter ‘n’
XPSAnalysis.cxx:1703: warning: unused parameter ‘names’
XPSAnalysis.cxx:1703: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1703: warning: unused parameter ‘output’
XPSAnalysis.cxx:1703: warning: unused parameter ‘sep’
XPSAnalysis.cxx:1995: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1995: warning: unused parameter ‘n’
XPSAnalysis.cxx:1995: warning: unused parameter ‘names’
XPSAnalysis.cxx:1995: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1995: warning: unused parameter ‘output’
XPSAnalysis.cxx:1995: warning: unused parameter ‘sep’
XPSAnalysis.cxx: In member function ‘virtual Int_t XUnivarSet::ExportUnivarTrees(Int_t, TString*, const char*, std::ofstream&, const char*)’:
XPSAnalysis.cxx:2189: warning: unused variable ‘option’
XPSAnalysis.cxx: At global scope:
XPSAnalysis.cxx:2698: warning: unused parameter ‘n’
XPSAnalysis.cxx:2698: warning: unused parameter ‘tree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2835: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2863: warning: unused parameter ‘n’
XPSAnalysis.cxx:2863: warning: unused parameter ‘names’
XPSAnalysis.cxx:2863: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘output’
XPSAnalysis.cxx:2863: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2911: warning: unused parameter ‘n’
XPSAnalysis.cxx:2911: warning: unused parameter ‘names’
XPSAnalysis.cxx:2911: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2911: warning: unused parameter ‘output’
XPSAnalysis.cxx:2911: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2980: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2980: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2980: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3008: warning: unused parameter ‘n’
XPSAnalysis.cxx:3008: warning: unused parameter ‘names’
XPSAnalysis.cxx:3008: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘output’
XPSAnalysis.cxx:3008: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3050: warning: unused parameter ‘n’
XPSAnalysis.cxx:3050: warning: unused parameter ‘names’
XPSAnalysis.cxx:3050: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3050: warning: unused parameter ‘output’
XPSAnalysis.cxx:3050: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3119: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:3119: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:3119: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3147: warning: unused parameter ‘n’
XPSAnalysis.cxx:3147: warning: unused parameter ‘names’
XPSAnalysis.cxx:3147: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘output’
XPSAnalysis.cxx:3147: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3189: warning: unused parameter ‘n’
XPSAnalysis.cxx:3189: warning: unused parameter ‘names’
XPSAnalysis.cxx:3189: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3189: warning: unused parameter ‘output’
XPSAnalysis.cxx:3189: warning: unused parameter ‘sep’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c rwrapper.cxx
In file included from XPSData.h:47,
                 from rwrapper.cxx:29:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from rwrapper.cxx:29:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from rwrapper.cxx:30:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from rwrapper.cxx:31:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
rwrapper.cxx:1387: warning: unused parameter ‘level’
Generating dictionary xpsDict.cxx...
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c xpsDict.cxx
In file included from xpsDict.h:40,
                 from xpsDict.cxx:16:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from xpsDict.h:41,
                 from xpsDict.cxx:16:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from xpsDict.h:46,
                 from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:47,
                 from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:48,
                 from xpsDict.cxx:16:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
MACOSX_DEPLOYMENT_TARGET=10.5 c++ -dynamiclib -single_module -undefined dynamic_lookup TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/lib/root -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lfreetype -lGui -pthread -lm -ldl  -lRIO -lGed -lTreePlayer -lTreeViewer -o  xps.dylib 
ln -sf xps.dylib xps.so
* DONE (xps)