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Package 305/319HostnameOS / ArchBUILDCHECKBUILD BIN
topGO 1.12.0
Adrian Alexa
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/topGO
Last Changed Rev: 39043 / Revision: 42512
Last Changed Date: 2009-04-21 16:07:55 -0700 (Tue, 21 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
Package: topGO
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes topGO_1.12.0.tar.gz
StartedAt: 2009-10-20 19:03:35 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:06:23 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 168.0 seconds
RetCode: 0
Status: OK
CheckDir: topGO.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/topGO.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'topGO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'topGO' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'topGO' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

topGO.Rcheck/00install.out:

* Installing *source* package ‘topGO’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
Package SparseM (0.80) loaded.  
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

Creating a new generic function for "print" in "topGO"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'topGO'
     Formats: text html latex example 
  GOTests                           text    html    latex
  GOdata                            text    html    latex   example
  annFUN                            text    html    latex   example
  classicCount-class                text    html    latex   example
  classicExpr-class                 text    html    latex   example
  classicScore-class                text    html    latex   example
  dagFunctions                      text    html    latex   example
  diagnosticMethods                 text    html    latex   example
  elimCount-class                   text    html    latex
  elimExpr-class                    text    html    latex   example
  elimScore-class                   text    html    latex   example
  geneList                          text    html    latex   example
  getPvalues                        text    html    latex   example
  getSigGroups                      text    html    latex   example
  groupGOTerms                      text    html    latex   example
  groupStats-class                  text    html    latex
  inducedGraph                      text    html    latex   example
  parentChild-class                 text    html    latex   example
  printGraph-methods                text    html    latex   example
  topGO-package                     text    html    latex
  topGOdata-class                   text    html    latex   example
  topGOresult-class                 text    html    latex   example
  weightCount-class                 text    html    latex
** building package indices ...
* DONE (topGO)