tilingArray 1.22.0
Zhenyu Xu
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/tilingArray | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/tilingArray.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'tilingArray/DESCRIPTION' ... OK
* this is package 'tilingArray' version '1.22.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'tilingArray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'tilingArray' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c findsegments.c -o findsegments.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c sampleStep.c -o sampleStep.o
gcc -shared -s -o tilingArray.dll tmp.def findsegments.o sampleStep.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
*** installing help indices
>>> Building/Updating help pages for package 'tilingArray'
Formats: text html latex example chm
PMindex text html latex example chm
breakpointsPretend text html latex chm
class-segmentation text html latex example chm
Note: removing empty section \details in file 'comparisonPlot.Rd'
Note: removing empty section \details in file 'comparisonPlot.Rd'
comparisonPlot text html latex example chm
costMatrix text html latex example chm
findsegments text html latex example chm
normalizeByReference text html latex example chm
otherStrand text html latex example chm
plotAlongChrom text html latex example chm
plotAlongChromLegend text html latex example chm
plotFeatures text html latex chm
plotSegmentationDots text html latex chm
plotSegmentationHeatmap text html latex chm
plotpenLL text html latex example chm
posMin text html latex example chm
qcPlots text html latex example chm
readCel2eSet text html latex example chm
sampleStep text html latex example chm
segChrom text html latex example chm
segment text html latex example chm
tilingArray-package text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\TILING~1.RCH\00_PKG~1\TILING~1\chm\tilingArray.chm
Compile time: 0 minutes, 0 seconds
22 Topics
65 Local links
1 Internet link
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\TILING~1.RCH\00_PKG~1\TILING~1\chm\tilingArray.chm, 57,020 bytes
Compression decreased file by 41,685 bytes.
** building package indices ...
** MD5 sums
* DONE (tilingArray)