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Package 279/319HostnameOS / ArchBUILDCHECKBUILD BIN
sigPathway 1.12.1
Weil Lai
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/sigPathway
Last Changed Rev: 41184 / Revision: 42512
Last Changed Date: 2009-08-15 10:51:48 -0700 (Sat, 15 Aug 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: sigPathway
Version: 1.12.1
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build sigPathway
StartedAt: 2009-10-20 14:49:31 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:50:03 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 32.3 seconds
RetCode: 0
Status: OK
PackageFile: sigPathway_1.12.1.tar.gz
PackageFileSize: 944.1 KiB

Command output

* checking for file 'sigPathway/DESCRIPTION' ... OK
* preparing 'sigPathway':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* Installing *source* package 'sigPathway' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c calc_gene_set_internal.c -o calc_gene_set_internal.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c calc_gene_set_stat.c -o calc_gene_set_stat.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c calc_probe_stat.c -o calc_probe_stat.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c calc_weights.c -o calc_weights.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c matrix_fn.c -o matrix_fn.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c permute.c -o permute.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c shuffle.c -o shuffle.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c sigPathway.c -o sigPathway.o
gcc -shared -s -o sigPathway.dll tmp.def calc_gene_set_internal.o calc_gene_set_stat.o calc_probe_stat.o calc_weights.o matrix_fn.o permute.o shuffle.o sigPathway.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lRlapack -Le:/biocbld/bbs-2.4-bioc/R/bin -lRblas -lgfortran -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'sigPathway'
     Formats: text html latex example chm 
  MuscleExample                     text    html    latex           chm
  calcTNullFast                     text    html    latex           chm
  calcTStatFast                     text    html    latex   example chm
  calculate.GSEA                    text    html    latex           chm
  calculate.NGSk                    text    html    latex   example chm
  calculatePathwayStatistics        text    html    latex   example chm
  estimateNumPerm                   text    html    latex   example chm
  getPathwayStatistics.NGSk         text    html    latex           chm
  getPathwayStatistics              text    html    latex           chm
  importGeneSets                    text    html    latex           chm
  rankPathways.NGSk                 text    html    latex           chm
  rankPathways                      text    html    latex           chm
  runSigPathway                     text    html    latex   example chm
  selectGeneSets                    text    html    latex           chm
  writeSigPathway                   text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\sigPathway\chm\sigPathway.chm





Compile time: 0 minutes, 1 second

16	Topics

39	Local links

11	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\sigPathway\chm\sigPathway.chm, 39,567 bytes

Compression decreased file by 31,996 bytes.

** building package indices ...
** MD5 sums
* DONE (sigPathway)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
    file 'sigPathway/src/Makevars' had non-LF line endings
* checking for empty or unneeded directories
* building 'sigPathway_1.12.1.tar.gz'