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Package 267/319HostnameOS / ArchBUILDCHECKBUILD BIN
rtracklayer 1.4.1
Michael Lawrence
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/rtracklayer
Last Changed Rev: 40476 / Revision: 42512
Last Changed Date: 2009-07-02 10:16:44 -0700 (Thu, 02 Jul 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 
Package: rtracklayer
Version: 1.4.1
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes rtracklayer_1.4.1.tar.gz
StartedAt: 2009-10-20 18:51:12 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:54:07 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 175.1 seconds
RetCode: 0
Status: WARNINGS
CheckDir: rtracklayer.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/rtracklayer.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49419)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'rtracklayer/DESCRIPTION' ... OK
* this is package 'rtracklayer' version '1.4.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rtracklayer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  IRanges RangedDataList
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.4-bioc/meat/rtracklayer.Rcheck/00check.log
for details

rtracklayer.Rcheck/00install.out:

* Installing *source* package ‘rtracklayer’ ...
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: bitops
** help
*** installing help indices
 >>> Building/Updating help pages for package 'rtracklayer'
     Formats: text html latex example 
  RangedData-methods                text    html    latex   example
  RangesList-methods                text    html    latex   example
  UCSCData-class                    text    html    latex
  UCSCTableQuery-class              text    html    latex   example
  activeView-methods                text    html    latex
  basicTrackLine-class              text    html    latex
  blocks-methods                    text    html    latex
  browseGenome                      text    html    latex   example
  browserSession-class              text    html    latex
  browserSession-methods            text    html    latex
  browserView-class                 text    html    latex
  browserView-methods               text    html    latex   example
  browserViews-methods              text    html    latex   example
  cpneTrack                         text    html    latex   example
  export                            text    html    latex   example
  export.gff                        text    html    latex   example
  genomeBrowsers                    text    html    latex
  genomeSequence-methods            text    html    latex
  import                            text    html    latex   example
  import.gff                        text    html    latex   example
  laySequence-methods               text    html    latex
  layTrack-methods                  text    html    latex   example
  targets                           text    html    latex   example
  tracks-methods                    text    html    latex
  ucscSession-class                 text    html    latex
  ucscTrackLine-class               text    html    latex
  ucscTrackModes-class              text    html    latex
  ucscTrackModes-methods            text    html    latex   example
  ucscView-class                    text    html    latex
  wigTrackLine-class                text    html    latex
** building package indices ...
* DONE (rtracklayer)