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Package 200/319HostnameOS / ArchBUILDCHECKBUILD BIN
multtest 2.0.0
Katherine S. Pollard
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/multtest
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
Package: multtest
Version: 2.0.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh multtest_2.0.0.tar.gz /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R multtest.buildbin-libdir
StartedAt: 2009-10-20 19:27:49 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:28:12 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 22.4 seconds
RetCode: 0
Status: OK
PackageFile: multtest_2.0.0.tgz
PackageFileSize: 1.656 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=multtest.buildbin-libdir multtest_2.0.0.tar.gz'

* Installing *source* package ‘multtest’ ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c Rpack.c -o Rpack.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c VScount.c -o VScount.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c block_sampling_fixed.c -o block_sampling_fixed.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c bootloop.c -o bootloop.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c mt.c -o mt.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c pairt_sampling.c -o pairt_sampling.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c random.c -o random.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c sampling.c -o sampling.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c sampling_fixed.c -o sampling_fixed.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c stat_func.c -o stat_func.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c stat_order.c -o stat_order.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c Rpack.c -o Rpack.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c VScount.c -o VScount.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c block_sampling_fixed.c -o block_sampling_fixed.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c bootloop.c -o bootloop.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c mt.c -o mt.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c pairt_sampling.c -o pairt_sampling.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c random.c -o random.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c sampling.c -o sampling.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c sampling_fixed.c -o sampling_fixed.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c stat_func.c -o stat_func.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c stat_order.c -o stat_order.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c Rpack.c -o Rpack.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c VScount.c -o VScount.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c block_sampling_fixed.c -o block_sampling_fixed.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c bootloop.c -o bootloop.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c mt.c -o mt.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c pairt_sampling.c -o pairt_sampling.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c random.c -o random.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c sampling.c -o sampling.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c sampling_fixed.c -o sampling_fixed.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c stat_func.c -o stat_func.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c stat_order.c -o stat_order.o
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c Rpack.c -o Rpack.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c VScount.c -o VScount.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c block_sampling_fixed.c -o block_sampling_fixed.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c bootloop.c -o bootloop.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c mt.c -o mt.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c pairt_sampling.c -o pairt_sampling.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c random.c -o random.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c sampling.c -o sampling.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c sampling_fixed.c -o sampling_fixed.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c stat_func.c -o stat_func.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c stat_order.c -o stat_order.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "as.list" in "multtest"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'multtest'
     Formats: text html latex example 
  EBMTP-class                       text    html    latex   example
  EBMTP                             text    html    latex   example
  Hsets                             text    html    latex   example
  MTP-class                         text    html    latex   example
  MTP-methods                       text    html    latex
  MTP                               text    html    latex   example
  boot.null                         text    html    latex   example
  corr.null                         text    html    latex   example
  fwer2gfwer                        text    html    latex   example
  get.index                         text    html    latex   example
  golub                             text    html    latex
  meanX                             text    html    latex   example
  mt.internal                       text    html    latex
  mt.maxT                           text    html    latex   example
  mt.plot                           text    html    latex   example
  mt.rawp2adjp                      text    html    latex   example
  mt.reject                         text    html    latex   example
  mt.sample.teststat                text    html    latex   example
  mt.teststat                       text    html    latex   example
  ss.maxT                           text    html    latex   example
  wapply                            text    html    latex   example
** building package indices ...
* DONE (multtest)