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Package 73/319HostnameOS / ArchBUILDCHECKBUILD BIN
crlmm 1.2.4
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/crlmm
Last Changed Rev: 40625 / Revision: 42512
Last Changed Date: 2009-07-14 17:21:23 -0700 (Tue, 14 Jul 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: crlmm
Version: 1.2.4
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD INSTALL --build --library=crlmm.buildbin-libdir crlmm_1.2.4.tar.gz
StartedAt: 2009-10-20 18:54:59 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:55:16 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 16.5 seconds
RetCode: 0
Status: OK
PackageFile: crlmm_1.2.4.zip
PackageFileSize: 850.9 KiB

Command output

* Installing *source* package 'crlmm' ...

  Using auto-selected zip options ''

** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gtypeCaller.c -o gtypeCaller.o
gtypeCaller.c: In function 'gtypeCallerPart1':
gtypeCaller.c:87: warning: unused variable 'ibv2'
gtypeCaller.c: In function 'gtypeCallerPart2':
gtypeCaller.c:310: warning: unused variable 'ibv2'
gtypeCaller.c:310: warning: unused variable 'ibv1'
gtypeCaller.c:307: warning: unused variable 'lenLists'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gtypeCallerNM.c -o gtypeCallerNM.o
gtypeCallerNM.c: In function 'gtypeCallerPart1nm':
gtypeCallerNM.c:212: warning: implicit declaration of function 'mad_median'
gtypeCallerNM.c:87: warning: unused variable 'ibv2'
gtypeCallerNM.c: In function 'gtypeCallerPart2nm':
gtypeCallerNM.c:310: warning: unused variable 'ibv2'
gtypeCallerNM.c:310: warning: unused variable 'ibv1'
gtypeCallerNM.c:307: warning: unused variable 'lenLists'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gtypeCallerNormalNoN.c -o gtypeCallerNormalNoN.o
gtypeCallerNormalNoN.c: In function 'gtypeCallerPart1NormalNoN':
gtypeCallerNormalNoN.c:87: warning: unused variable 'ibv2'
gtypeCallerNormalNoN.c: In function 'gtypeCallerPart2NormalNoN':
gtypeCallerNormalNoN.c:292: warning: unused variable 'ibv2'
gtypeCallerNormalNoN.c:292: warning: unused variable 'ibv1'
gtypeCallerNormalNoN.c:289: warning: unused variable 'lenLists'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gtypeCallerTNoN.c -o gtypeCallerTNoN.o
gtypeCallerTNoN.c: In function 'gtypeCallerPart1TNoN':
gtypeCallerTNoN.c:87: warning: unused variable 'ibv2'
gtypeCallerTNoN.c: In function 'gtypeCallerPart2TNoN':
gtypeCallerTNoN.c:292: warning: unused variable 'ibv2'
gtypeCallerTNoN.c:292: warning: unused variable 'ibv1'
gtypeCallerTNoN.c:289: warning: unused variable 'lenLists'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c tmp.c -o tmp.o
tmp.c: In function 'test':
tmp.c:17: warning: implicit declaration of function 'genotypeConfidence'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c trimmed.c -o trimmed.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c utils.c -o utils.o
utils.c: In function 'mad_median':
utils.c:124: warning: unused variable 'n_ignore'
gcc -shared -s -o crlmm.dll tmp.def gtypeCaller.o gtypeCallerNM.o gtypeCallerNormalNoN.o gtypeCallerTNoN.o init.o tmp.o trimmed.o utils.o -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'crlmm'
     Formats: text html latex example chm 
  celDates                          text    html    latex           chm
  cnrma                             text    html    latex   example chm
  computeCopynumber                 text    html    latex           chm
  crlmm-package                     text    html    latex           chm
  crlmm                             text    html    latex   example chm
  crlmmIllumina                     text    html    latex   example chm
  list.celfiles                     text    html    latex   example chm
  methods-SnpSet                    text    html    latex   example chm
  readIdatFiles                     text    html    latex   example chm
  snprma                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpbJsZw7\R.INSTALL678418be\crlmm\chm\crlmm.chm





Compile time: 0 minutes, 2 seconds

11	Topics

23	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpbJsZw7\R.INSTALL678418be\crlmm\chm\crlmm.chm, 33,722 bytes

Compression decreased file by 13,857 bytes.

** building package indices ...
** MD5 sums
packaged installation of 'crlmm' as crlmm_1.2.4.zip
* DONE (crlmm)