Ringo 1.8.0
J. Toedling
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/Ringo | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/Ringo.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Ringo/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Ringo' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Ringo' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
oneChannelVSN: no visible global function definition for 'vsnMatrix'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'Ringo' ...
** libs
making DLL ...
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c mmeansd.cpp -o mmeansd.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c mmedian.cpp -o mmedian.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c region_overlap.c -o region_overlap.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c ringo_init.c -o ringo_init.o
g++ -shared -s -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: lattice
Attaching package: 'Matrix'
The following object(s) are masked from package:stats :
contr.SAS,
contr.helmert,
contr.poly,
contr.sum,
contr.treatment,
xtabs
The following object(s) are masked from package:base :
rcond
Creating a new generic function for "plot" in "Ringo"
Creating a new generic function for "get" in "Ringo"
Creating a new generic function for "ls" in "Ringo"
** help
*** installing help indices
>>> Building/Updating help pages for package 'Ringo'
Formats: text html latex example chm
Ringo-internal text html latex chm
arrayImage text html latex example chm
asExprSet text html latex example chm
autocorr text html latex example chm
cherByThreshold text html latex example chm
cherClass text html latex example chm
chipAlongChrom text html latex example chm
computeRunningMedians text html latex example chm
compute_gc text html latex example chm
compute_sliding_t text html latex example chm
corrPlot text html latex example chm
exportCherList text html latex example chm
extractProbeAnno text html latex chm
features2Probes text html latex example chm
findChersOnSmoothed text html latex example chm
ftr2xys text html latex example chm
getFeats text html latex chm
newCER text html latex example chm
nimblegenNorm text html latex chm
nonzero text html latex example chm
plotAutocorr text html latex example chm
plotBM text html latex example chm
plot_cher text html latex chm
posToProbeAnnoEnvironment text html latex example chm
preprocess text html latex example chm
probeAnnoClass text html latex example chm
readNimblegen text html latex example chm
regionoverlap text html latex example chm
relateCERs text html latex example chm
sliding_meansd text html latex example chm
sliding_quantile text html latex example chm
twoGaussiansNull text html latex example chm
upperBoundNull text html latex example chm
validProbeAnno text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\RINGO~1.RCH\00_PKG~1\Ringo\chm\Ringo.chm
Compile time: 0 minutes, 0 seconds
35 Topics
150 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\RINGO~1.RCH\00_PKG~1\Ringo\chm\Ringo.chm, 75,136 bytes
Compression decreased file by 86,466 bytes.
** building package indices ...
** MD5 sums
* DONE (Ringo)