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Package 166/319HostnameOS / ArchBUILDCHECKBUILD BIN
LMGene 1.14.0
John Tillinghast
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/LMGene
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: LMGene
Version: 1.14.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes LMGene_1.14.0.tar.gz
StartedAt: 2009-10-20 17:29:31 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:30:50 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 79.4 seconds
RetCode: 0
Status: OK
CheckDir: LMGene.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/LMGene.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LMGene/DESCRIPTION' ... OK
* this is package 'LMGene' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'LMGene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

LMGene.Rcheck/00install.out:

* Installing *source* package 'LMGene' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines
** help
*** installing help indices
 >>> Building/Updating help pages for package 'LMGene'
     Formats: text html latex example chm 
Note: removing empty section \details in file 'GetLMObj.Rd'
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Note: removing empty section \seealso in file 'GetLMObj.Rd'
  GetLMObj                          text    html    latex   example chm
  LMGene                            text    html    latex   example chm
  genediff                          text    html    latex   example chm
  glog                              text    html    latex   example chm
  jggrad2                           text    html    latex   example chm
  jglog                             text    html    latex   example chm
  lnorm                             text    html    latex   example chm
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  lnormeS                           text    html    latex   example chm
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Note: removing empty section \seealso in file 'mlm2lm.Rd'
  mlm2lm                            text    html    latex   example chm
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  msa                               text    html    latex   example chm
  msecalc                           text    html    latex   example chm
  msecalcmult                       text    html    latex   example chm
  neweS                             text    html    latex   example chm
  norm                              text    html    latex   example chm
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  psmeans                           text    html    latex   example chm
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  rowlist                           text    html    latex   example chm
  sample.eS                         text    html    latex   example chm
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  sample.ind                        text    html    latex   example chm
  sample.mat                        text    html    latex   example chm
  tranest                           text    html    latex   example chm
  tranest2                          text    html    latex   example chm
  tranestmult                       text    html    latex   example chm
Note: removing empty section \details in file 'transeS.Rd'
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  transeS                           text    html    latex   example chm
  vlist                             text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\LMGENE~1.RCH\00_PKG~1\LMGene\chm\LMGene.chm


Compile time: 0 minutes, 0 seconds
27	Topics
109	Local links
19	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\LMGENE~1.RCH\00_PKG~1\LMGene\chm\LMGene.chm, 38,825 bytes
Compression decreased file by 41,463 bytes.
** building package indices ...
** MD5 sums
* DONE (LMGene)