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Package 199/294HostnameOS / ArchBUILDCHECKBUILD BIN
panp 1.12.0
Peter Warren
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/panp
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: panp
Version: 1.12.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes panp_1.12.0.tar.gz
StartedAt: 2009-04-18 19:34:34 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:35:14 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 40.2 seconds
RetCode: 0
Status: OK
CheckDir: panp.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/panp.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'panp/DESCRIPTION' ... OK
* this is package 'panp' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'panp' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
pa.calls: no visible binding for global variable 'NSMPnames.hgu133a'
pa.calls: no visible binding for global variable
  'NSMPnames.hgu133plus2'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating panp-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating panp-manual.tex ... OK
* checking panp-manual.tex using pdflatex ... OK

panp.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/panp.Rcheck


---------- Making package panp ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  preparing package panp for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'panp'
     Formats: text html latex example chm 
  NSMPnames.hgu133a                 text    html    latex           chm
  NSMPnames.hgu133plus2             text    html    latex           chm
  gcrma.ExpressionSet               text    html    latex           chm
  pa.calls                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\panp.Rcheck\00_pkg_src\panp\chm\panp.chm


Compile time: 0 minutes, 0 seconds
5	Topics
8	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\panp.Rcheck\00_pkg_src\panp\chm\panp.chm, 20,111 bytes
Compression increased file by 5,010 bytes.
  adding MD5 sums

* DONE (panp)