Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 161/294HostnameOS / ArchBUILDCHECKBUILD BIN
made4 1.16.0
Aedin Culhane
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/made4
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ OK ] OK 
Package: made4
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes made4_1.16.0.tar.gz
StartedAt: 2009-04-18 17:45:26 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:46:18 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 51.4 seconds
RetCode: 0
Status: OK
CheckDir: made4.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/made4.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'made4/DESCRIPTION' ... OK
* this is package 'made4' version '1.16.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'made4' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getdata: no visible binding for global variable 'intensities'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating made4-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating made4-manual.tex ... OK
* checking made4-manual.tex using pdflatex ... OK

made4.Rcheck/00install.out:

* Installing *source* package 'made4' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: ade4

Attaching package: 'ade4'


	The following object(s) are masked from package:base :

	 within 

** help
 >>> Building/Updating help pages for package 'made4'
     Formats: text html latex example 
  NCI60                             text    html    latex   example
Note: removing empty section \references in file 'array2ade4.Rd'
  array2ade4                        text    html    latex   example
  bet.coinertia                     text    html    latex   example
Note: removing empty section \value in file 'between.graph.Rd'
Note: removing empty section \note in file 'between.graph.Rd'
  between.graph                     text    html    latex   example
  bga                               text    html    latex   example
  bga.jackknife                     text    html    latex   example
  bga.suppl                         text    html    latex   example
Note: removing empty section \details in file 'checkfac.Rd'
Note: removing empty section \note in file 'checkfac.Rd'
Note: removing empty section \seealso in file 'checkfac.Rd'
Note: removing empty section \examples in file 'checkfac.Rd'
  checkfac                          text    html    latex
Note: removing empty section \seealso in file 'chime3D.Rd'
Note: removing empty section \examples in file 'chime3D.Rd'
  chime3D                           text    html    latex
Note: removing empty section \note in file 'cia.Rd'
  cia                               text    html    latex   example
Note: removing empty section \value in file 'commonMap.Rd'
Note: removing empty section \references in file 'commonMap.Rd'
  commonMap                         text    html    latex   example
  comparelists                      text    html    latex   example
Note: removing empty section \details in file 'do3d.Rd'
Note: removing empty section \note in file 'do3d.Rd'
Note: removing empty section \references in file 'do3d.Rd'
  do3d                              text    html    latex   example
Note: removing empty section \examples in file 'dudi.rwcoa.Rd'
  dudi.rwcoa                        text    html    latex
Note: removing empty section \examples in file 'forrwcoa.Rd'
  forrwcoa                          text    html    latex
Note: removing empty section \value in file 'genes.Rd'
Note: removing empty section \examples in file 'genes.Rd'
  genes                             text    html    latex
Note: removing empty section \references in file 'genes1d.Rd'
  genes1d                           text    html    latex   example
  getcol                            text    html    latex   example
Note: removing empty section \examples in file 'getdata.Rd'
  getdata                           text    html    latex
Note: removing empty section \value in file 'graph1D.Rd'
Note: removing empty section \details in file 'graph1D.Rd'
Note: removing empty section \note in file 'graph1D.Rd'
Note: removing empty section \references in file 'graph1D.Rd'
  graph1D                           text    html    latex   example
  heatplot                          text    html    latex   example
Note: removing empty section \seealso in file 'html3D.Rd'
  html3D                            text    html    latex   example
Note: removing empty section \seealso in file 'jmol3D.Rd'
Note: removing empty section \examples in file 'jmol3D.Rd'
  jmol3D                            text    html    latex
  khan                              text    html    latex   example
Note: removing empty section \references in file 'ord.Rd'
  ord                               text    html    latex   example
Note: removing empty section \value in file 'overview.Rd'
Note: removing empty section \note in file 'overview.Rd'
Note: removing empty section \references in file 'overview.Rd'
  overview                          text    html    latex   example
  plotarrays                        text    html    latex   example
  plotgenes                         text    html    latex   example
Note: removing empty section \value in file 'pretty.dend.Rd'
Note: removing empty section \note in file 'pretty.dend.Rd'
Note: removing empty section \references in file 'pretty.dend.Rd'
  pretty.dend                       text    html    latex   example
  randomiser                        text    html    latex   example
  s.var                             text    html    latex   example
Note: removing empty section \note in file 'sumstats.Rd'
Note: removing empty section \references in file 'sumstats.Rd'
Note: removing empty section \seealso in file 'sumstats.Rd'
  sumstats                          text    html    latex   example
  suppl                             text    html    latex   example
Note: removing empty section \note in file 'topgenes.Rd'
Note: removing empty section \references in file 'topgenes.Rd'
  topgenes                          text    html    latex   example
** building package indices ...
* DONE (made4)