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Package 159/294HostnameOS / ArchBUILDCHECKBUILD BIN
maCorrPlot 1.12.0
Alexander Ploner
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/maCorrPlot
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ WARNINGS ] OK 
Package: maCorrPlot
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes maCorrPlot_1.12.0.tar.gz
StartedAt: 2009-04-18 17:45:04 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:45:26 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 21.9 seconds
RetCode: 0
Status: WARNINGS
CheckDir: maCorrPlot.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/maCorrPlot.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'maCorrPlot/DESCRIPTION' ... OK
* this is package 'maCorrPlot' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maCorrPlot' can be installed ... WARNING
Found the following significant warnings:
  WARNING: found \itemize inside \value in file 'CorrSample.Rd'
  WARNING: found \itemize inside \value in file 'CutCI.Rd'
See '/Users/biocbuild/bbs-2.3-bioc/meat/maCorrPlot.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.corr.sample':
  plot.corr.sample

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating maCorrPlot-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating maCorrPlot-manual.tex ... OK
* checking maCorrPlot-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.3-bioc/meat/maCorrPlot.Rcheck/00check.log
for details

maCorrPlot.Rcheck/00install.out:

* Installing *source* package 'maCorrPlot' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: lattice
** help
 >>> Building/Updating help pages for package 'maCorrPlot'
     Formats: text html latex example 
WARNING: found \itemize inside \value in file 'CorrSample.Rd'
  CorrSample                        text    html    latex   example
WARNING: found \itemize inside \value in file 'CutCI.Rd'
  CutCI                             text    html    latex   example
  oligodata                         text    html    latex   example
  plot.corr.sample                  text    html    latex   example
** building package indices ...
* DONE (maCorrPlot)