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Package 96/294HostnameOS / ArchBUILDCHECKBUILD BIN
gaggle 1.10.0
Dan Tenenbaum
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/gaggle
Last Changed Rev: 37396 / Revision: 38965
Last Changed Date: 2009-02-13 14:14:07 -0800 (Fri, 13 Feb 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: gaggle
Version: 1.10.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes gaggle_1.10.0.tar.gz
StartedAt: 2009-04-18 18:48:20 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:48:58 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 38.1 seconds
RetCode: 0
Status: OK
CheckDir: gaggle.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/gaggle.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'gaggle/DESCRIPTION' ... OK
* this is package 'gaggle' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gaggle' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.broadcastAssociativeArray: no visible binding for global variable
  'goose'
.broadcastEnvironment: no visible binding for global variable 'goose'
.broadcastGraph: no visible binding for global variable 'goose'
broadcast: no visible binding for global variable 'goose'
connectToGaggle: no visible binding for global variable 'goose'
disconnectFromGaggle: no visible binding for global variable 'goose'
gaggleInit: no visible binding for '<<-' assignment to 'goose'
gaggleInit: no visible binding for '<<-' assignment to 'targetGoose'
gaggleInit: no visible binding for global variable 'goose'
geese: no visible binding for global variable 'goose'
getCluster: no visible binding for global variable 'goose'
getMatrix: no visible binding for global variable 'goose'
getNameList: no visible binding for global variable 'goose'
getNetwork: no visible binding for global variable 'goose'
getSpecies: no visible binding for global variable 'goose'
getTargetGoose: no visible binding for global variable 'goose'
getTuple: no visible binding for global variable 'goose'
hideGoose: no visible binding for global variable 'goose'
setSpecies: no visible binding for global variable 'goose'
setTargetGoose: no visible binding for '<<-' assignment to
  'targetGoose'
setTargetGoose: no visible binding for global variable 'goose'
showGoose: no visible binding for global variable 'goose'
testGagglePackage: no visible global function definition for
  'test.gaggle'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating gaggle-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gaggle-manual.tex ... OK
* checking gaggle-manual.tex using pdflatex ... OK

gaggle.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/gaggle.Rcheck


---------- Making package gaggle ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package gaggle for lazy loading
Loading required package: rJava
Loading required package: graph
Loading required package: RUnit
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'gaggle'
     Formats: text html latex example chm 
  broadcast                         text    html    latex           chm
Note: removing empty section \arguments in file 'connectToGaggle.Rd'
Note: removing empty section \arguments in file 'connectToGaggle.Rd'
  connectToGaggle                   text    html    latex           chm
Note: removing empty section \arguments in file 'disconnectFromGaggle.Rd'
Note: removing empty section \arguments in file 'disconnectFromGaggle.Rd'
  disconnectFromGaggle              text    html    latex           chm
  gaggleInit                        text    html    latex           chm
  geese                             text    html    latex           chm
Note: removing empty section \arguments in file 'getCluster.Rd'
Note: removing empty section \arguments in file 'getCluster.Rd'
  getCluster                        text    html    latex           chm
  getMatrix                         text    html    latex           chm
Note: removing empty section \arguments in file 'getNameList.Rd'
Note: removing empty section \arguments in file 'getNameList.Rd'
  getNameList                       text    html    latex           chm
  getNetwork                        text    html    latex           chm
  getSpecies                        text    html    latex           chm
  getTargetGoose                    text    html    latex           chm
Note: removing empty section \arguments in file 'getTuple.Rd'
Note: removing empty section \arguments in file 'getTuple.Rd'
  getTuple                          text    html    latex           chm
  hideGoose                         text    html    latex           chm
  setSpecies                        text    html    latex           chm
  setTargetGoose                    text    html    latex           chm
  showGoose                         text    html    latex           chm
  testGagglePackage                 text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\gaggle.Rcheck\00_pkg_src\gaggle\chm\gaggle.chm


Compile time: 0 minutes, 0 seconds
18	Topics
79	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\gaggle.Rcheck\00_pkg_src\gaggle\chm\gaggle.chm, 25,379 bytes
Compression decreased file by 11,961 bytes.
  adding MD5 sums

* DONE (gaggle)