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Package 241/294HostnameOS / ArchBUILDCHECKBUILD BIN
RNAither 1.4.6
Nora Rieber
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/RNAither
Last Changed Rev: 36716 / Revision: 38965
Last Changed Date: 2009-01-16 09:08:57 -0800 (Fri, 16 Jan 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: RNAither
Version: 1.4.6
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes RNAither_1.4.6.tar.gz
StartedAt: 2009-04-18 19:52:17 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:56:11 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 233.2 seconds
RetCode: 0
Status: OK
CheckDir: RNAither.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/RNAither.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'RNAither/DESCRIPTION' ... OK
* this is package 'RNAither' version '1.4.6'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RNAither' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating RNAither-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating RNAither-manual.tex ... OK
* checking RNAither-manual.tex using pdflatex ... OK

RNAither.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/RNAither.Rcheck


---------- Making package RNAither ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package RNAither for lazy loading
Loading required package: topGO
Loading required package: graph
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: SparseM

Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

Loading required package: RankProd
Loading required package: prada
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'RNAither'
     Formats: text html latex example chm 
  BScore                            text    html    latex   example chm
  DRQualControl                     text    html    latex   example chm
  LiWongRank                        text    html    latex   example chm
  MannWhitney                       text    html    latex   example chm
  RNAither-package                  text    html    latex           chm
  RankProduct                       text    html    latex   example chm
  SNRQualControl                    text    html    latex   example chm
  Ttest                             text    html    latex   example chm
  ZPRIMEQualControl                 text    html    latex   example chm
  ZScore                            text    html    latex   example chm
  ZScorePerScreen                   text    html    latex   example chm
  ZScorePlot                        text    html    latex   example chm
  ZScorePlotTwo                     text    html    latex   example chm
  channelPlot                       text    html    latex   example chm
  closestToZero                     text    html    latex   example chm
  compareHits                       text    html    latex   example chm
  compareReplicaPlates              text    html    latex   example chm
  compareReplicateSD                text    html    latex   example chm
  compareReplicateSDPerScreen       text    html    latex   example chm
  compareReplicates                 text    html    latex   example chm
  controlDensity                    text    html    latex   example chm
  controlDensityPerPlate            text    html    latex   example chm
  controlDensityPerScreen           text    html    latex   example chm
  controlNorm                       text    html    latex   example chm
  createSubset                      text    html    latex   example chm
  dataset                           text    html    latex           chm
  datasetDrosophila                 text    html    latex           chm
  discardLabtek                     text    html    latex   example chm
  discardWells                      text    html    latex   example chm
  divNorm                           text    html    latex   example chm
  divideChannels                    text    html    latex   example chm
  eraseDataSetColumn                text    html    latex   example chm
  findReplicates                    text    html    latex   example chm
  furthestFromZero                  text    html    latex   example chm
  generateDatasetFile               text    html    latex   example chm
  generateRepMatNoFilter            text    html    latex   example chm
  generateReplicateMat              text    html    latex   example chm
  gseaAnalysis                      text    html    latex   example chm
  header                            text    html    latex           chm
  headerDrosophila                  text    html    latex           chm
  hitselectionPval                  text    html    latex   example chm
  hitselectionZscore                text    html    latex   example chm
  hitselectionZscorePval            text    html    latex   example chm
  incorporatepValVec                text    html    latex   example chm
  indexSubset                       text    html    latex   example chm
  joinDatasetFiles                  text    html    latex   example chm
  joinDatasets                      text    html    latex   example chm
  lowessNorm                        text    html    latex   example chm
  mainAnalysis                      text    html    latex   example chm
  makeBoxplot4PlateType             text    html    latex   example chm
  makeBoxplotControls               text    html    latex   example chm
  makeBoxplotControlsPerPlate       text    html    latex   example chm
  makeBoxplotControlsPerScreen      text    html    latex   example chm
  makeBoxplotPerPlate               text    html    latex   example chm
  makeBoxplotPerScreen              text    html    latex   example chm
  multTestAdjust                    text    html    latex   example chm
  numCellQualControl                text    html    latex   example chm
  orderGeneIDs                      text    html    latex   example chm
  pValVec1                          text    html    latex           chm
  pValVec2                          text    html    latex           chm
  percCellQualControl               text    html    latex   example chm
  plotBar                           text    html    latex   example chm
  plotControlHisto                  text    html    latex   example chm
  plotControlHistoPerplate          text    html    latex   example chm
  plotControlHistoPerscreen         text    html    latex   example chm
  plotHisto                         text    html    latex   example chm
  plotHistoPerplate                 text    html    latex   example chm
  plotHistoPerscreen                text    html    latex   example chm
  plotQQ                            text    html    latex   example chm
  plotQQperplate                    text    html    latex   example chm
  plotQQperscreen                   text    html    latex   example chm
  quantileNormalization             text    html    latex   example chm
  replicatesCV                      text    html    latex   example chm
  replicatesSpearmancor             text    html    latex   example chm
  rms                               text    html    latex   example chm
  saveDataset                       text    html    latex   example chm
  saveOldIntensityColumns           text    html    latex   example chm
  savepValVec                       text    html    latex   example chm
  scoredDataset1                    text    html    latex           chm
  scoredDataset2                    text    html    latex           chm
  spatialDistrib                    text    html    latex   example chm
  spatialDistribHits                text    html    latex   example chm
  subtractBackground                text    html    latex   example chm
  sumChannels                       text    html    latex   example chm
  summarizeReps                     text    html    latex   example chm
  summarizeRepsNoFiltering          text    html    latex   example chm
  trim                              text    html    latex   example chm
  varAdjust                         text    html    latex   example chm
  vennDiag                          text    html    latex   example chm
  volcanoPlot                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\RNAither.Rcheck\00_pkg_src\RNAither\chm\RNAither.chm


Compile time: 0 minutes, 1 second
91	Topics
499	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\RNAither.Rcheck\00_pkg_src\RNAither\chm\RNAither.chm, 87,777 bytes
Compression decreased file by 199,615 bytes.
  adding MD5 sums

* DONE (RNAither)