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Package 102/294HostnameOS / ArchBUILDCHECKBUILD BIN
GeneR 2.12.0
Y. d'Aubenton-Carafa
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GeneR
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: GeneR
Version: 2.12.0
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD build GeneR
StartedAt: 2009-04-18 13:24:56 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 13:25:09 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 12.5 seconds
RetCode: 0
Status: OK
PackageFile: GeneR_2.12.0.tar.gz
PackageFileSize: 251.9 KiB

Command output

* checking for file 'GeneR/DESCRIPTION' ... OK
* preparing 'GeneR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
* installing the package to re-build vignettes
* Installing *source* package 'GeneR' ...
** libs
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c complementaire.cc -o complementaire.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c compoSeq.cc -o compoSeq.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c dnaRna.cc -o dnaRna.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GeneR_glob.cc -o GeneR_glob.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GeneR_seq.cc -o GeneR_seq.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c libIndex.cc -o libIndex.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c libStrings.cc -o libStrings.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c makeIndex.cc -o makeIndex.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c masked.cc -o masked.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c misc.cc -o misc.o
misc.cc: In function ‘SEXPREC* str_to_nbstr(SEXPREC*, SEXPREC*)’:
misc.cc:31: warning: ‘multiple’ may be used uninitialized in this function
misc.cc:30: warning: ‘ans’ may be used uninitialized in this function
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readEmblDescript.cc -o readEmblDescript.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readIndex.cc -o readIndex.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readLocation.cc -o readLocation.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readSeqEmbl.cc -o readSeqEmbl.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readSeqFasta.cc -o readSeqFasta.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readSeqGbk.cc -o readSeqGbk.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c seqManip.cc -o seqManip.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c strcasestr.c -o strcasestr.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c translate.cc -o translate.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c upperSeq.cc -o upperSeq.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c vecteurs.cc -o vecteurs.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c writeFasta.cc -o writeFasta.o
g++ -shared -L/usr/local/lib64 -o GeneR.so complementaire.o compoSeq.o dnaRna.o GeneR_glob.o GeneR_seq.o libIndex.o libStrings.o makeIndex.o masked.o misc.o readEmblDescript.o readIndex.o readLocation.o readSeqEmbl.o readSeqFasta.o readSeqGbk.o seqManip.o strcasestr.o translate.o upperSeq.o vecteurs.o writeFasta.o   -L/home/biocbuild/bbs-2.3-bioc/R/lib -lR
** R
** demo
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'GeneR'
     Formats: text html latex example 
  01GeneR                           text    html    latex   example
  02globalSeg                       text    html    latex   example
  02globals                         text    html    latex   example
  Allorf                            text    html    latex   example
  AtoR                              text    html    latex   example
  Match                             text    html    latex   example
  Xor.globalSeg                     text    html    latex   example
  Xor.segSet                        text    html    latex   example
  and.globalSeg                     text    html    latex   example
  and.segSet                        text    html    latex   example
  appendSeq                         text    html    latex   example
  as.globalSeg                      text    html    latex
  as.segSet                         text    html    latex
  assemble                          text    html    latex   example
  bankDensityProfile                text    html    latex   example
  bankSummary                       text    html    latex   example
  compos.seq                        text    html    latex   example
  concat                            text    html    latex   example
  deleteCR                          text    html    latex   example
  densityProfile                    text    html    latex   example
  dna.rna                           text    html    latex   example
  exact.word                        text    html    latex   example
  fasta.descript                    text    html    latex   example
  free.seq                          text    html    latex   example
  getAccn                           text    html    latex
  getParam                          text    html    latex
  getseq                            text    html    latex   example
  indexfasta                        text    html    latex
  insert                            text    html    latex   example
  lower                             text    html    latex   example
  makeIndex                         text    html    latex   example
  mask                              text    html    latex   example
  not.globalSeg                     text    html    latex   example
  not.segSet                        text    html    latex   example
  or.globalSeg                      text    html    latex   example
  or.segSet                         text    html    latex   example
  placestring                       text    html    latex   example
  plot.globalSeg                    text    html    latex   example
  posMaskedSeq                      text    html    latex   example
  randomSeq                         text    html    latex   example
  read.gbk.location                 text    html    latex   example
  readEmblDescript                  text    html    latex   example
  readseq                           text    html    latex   example
  relist                            text    html    latex   example
  revcomp                           text    html    latex   example
  seqSkew                           text    html    latex   example
  sequrl                            text    html    latex   example
  setAccn                           text    html    latex
  setParam                          text    html    latex
  size.globalSeg                    text    html    latex   example
  sizeseq                           text    html    latex   example
  sizeseqfasta                      text    html    latex   example
  sliceSegment                      text    html    latex   example
  translation                       text    html    latex   example
  write.fasta                       text    html    latex   example
  writeEMBL                         text    html    latex   example
** building package indices ...
* DONE (GeneR)
* creating vignettes ... OK
* cleaning src
* running cleanup
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GeneR_2.12.0.tar.gz'