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Package 183/260HostnameOS / ArchBUILDCHECKBUILD BIN
plw 1.0.0
Magnus Astrand
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/plw
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: plw
Version: 1.0.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check plw_1.0.0.tar.gz
StartedAt: 2008-10-16 07:01:38 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 07:04:03 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 145.5 seconds
RetCode: 0
Status: OK
CheckDir: plw.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/plw.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'plw/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'plw' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plw' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating plw-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating plw-manual.tex ... OK
* checking plw-manual.tex using pdflatex ... OK

plw.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/plw.Rcheck


---------- Making package plw ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making SpecialFunctions.d from SpecialFunctions.c
making SpecialOptim.d from SpecialOptim.c
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c SpecialFunctions.c -o SpecialFunctions.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c SpecialOptim.c -o SpecialOptim.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include  -i plw_res.rc -o plw_res.o
gcc  -std=gnu99  -shared -s  -o plw.dll plw.def SpecialFunctions.o SpecialOptim.o plw_res.o  -Le:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package plw for lazy loading
Loading required package: MASS
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: preprocessCore
Loading required package: splines
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'plw'
     Formats: text html latex example chm 
  AffySpikeU95Subset                text    html    latex           chm
  HowToPLW                          text    html    latex   example chm
  estimateMVbeta                    text    html    latex           chm
  estimateSigma                     text    html    latex           chm
  estimateSigmaMV                   text    html    latex           chm
  estimateSigmaMVbeta               text    html    latex           chm
  getKnots                          text    html    latex           chm
  lmw                               text    html    latex   example chm
  logitT                            text    html    latex   example chm
  plw-package                       text    html    latex           chm
  plw                               text    html    latex   example chm
  scaleParameterPlot                text    html    latex   example chm
  statByIndex                       text    html    latex   example chm
  topRankSummary                    text    html    latex   example chm
  varHistPlot                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\plw.Rcheck\00_pkg_src\plw\chm\plw.chm


Compile time: 0 minutes, 0 seconds
16	Topics
41	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\plw.Rcheck\00_pkg_src\plw\chm\plw.chm, 37,338 bytes
Compression decreased file by 33,228 bytes.
  adding MD5 sums

* DONE (plw)