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Package 184/260HostnameOS / ArchBUILDCHECKBUILD BIN
ppiStats 1.6.0
Tony Chiang
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/ppiStats
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: ppiStats
Version: 1.6.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check ppiStats_1.6.0.tar.gz
StartedAt: 2008-08-08 06:51:53 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 06:55:07 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 194.1 seconds
RetCode: 0
Status: OK
CheckDir: ppiStats.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/ppiStats.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'ppiStats/DESCRIPTION' ... OK
* this is package 'ppiStats' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiStats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ppiStats-Ex.R ... OK
* checking examples ... OK
* creating ppiStats-manual.tex ... OK
* checking ppiStats-manual.tex using pdflatex ... OK

ppiStats.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/ppiStats.Rcheck


---------- Making package ppiStats ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package ppiStats for lazy loading
Loading required package: GO

******* Deprecation warning *******:

The package 'GO' is deprecated and will not be supported in the future. 

Instead we strongly reccomend that you should start using the 'GO.db' package. 

We hope you will enjoy these new packages.  If you still have questions, you can search 
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list 
(http://bioconductor.org/docs/mailList.html).  


Loading required package: GOstats
Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite

Attaching package: 'GO.db'


	The following object(s) are masked from package:GO :

	 GO,
	 GOBPANCESTOR,
	 GOBPCHILDREN,
	 GOBPOFFSPRING,
	 GOBPPARENTS,
	 GOCCANCESTOR,
	 GOCCCHILDREN,
	 GOCCOFFSPRING,
	 GOCCPARENTS,
	 GOMAPCOUNTS,
	 GOMFANCESTOR,
	 GOMFCHILDREN,
	 GOMFOFFSPRING,
	 GOMFPARENTS,
	 GOOBSOLETE,
	 GOSYNONYM,
	 GOTERM 

Loading required package: annotate
Loading required package: xtable
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: YEAST

******* Deprecation warning *******:

The package 'YEAST' is deprecated and will not be supported in the future. 

Instead we strongly reccomend that you should start using the 'org.Sc.sgd.db' package. 

We hope you will enjoy these new packages.  If you still have questions, you can search 
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list 
(http://bioconductor.org/docs/mailList.html).  


Loading required package: ppiData
Loading required package: Rgraphviz
Loading required package: grid

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:annotate :

	 toFile 

Loading required package: ScISI
Loading required package: apComplex
Loading required package: Rintact
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

Loading required package: hypergraph

Attaching package: 'hypergraph'


	The following object(s) are masked from package:Rgraphviz :

	 head,
	 tail 


	The following object(s) are masked from package:xtable :

	 label,
	 label<- 


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

Loading required package: lattice
Loading required package: RColorBrewer
  installing man source files
  installing indices
  installing help
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \references
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'ppiStats'
     Formats: text html latex example chm 
  assessSymmetry                    text    html    latex   example chm
  bpMatrix                          text    html    latex   example chm
  calcInOutDegStats                 text    html    latex   example chm
  createSummaryTables               text    html    latex   example chm
  degreeEstimates                   text    html    latex   example chm
  estErrProbMethodOfMoments         text    html    latex   example chm
  estimateCCMErrorRates             text    html    latex   example chm
  estimatePPIErrorRates             text    html    latex   example chm
  genBPGraph                        text    html    latex   example chm
  hgParams                          text    html    latex           chm
  hgTests                           text    html    latex           chm
  idProteinErrorType                text    html    latex   example chm
  idProteinType                     text    html    latex   example chm
  inOutScatterCharts                text    html    latex   example chm
  nullDistDoublyTestedEdges         text    html    latex   example chm
  separateExptBySize                text    html    latex           chm
  twPERM                            text    html    latex   example chm
  viabilityCharts                   text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm


Compile time: 0 minutes, 0 seconds
19	Topics
44	Local links
2	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm, 42,529 bytes
Compression decreased file by 28,078 bytes.
  adding MD5 sums

* DONE (ppiStats)