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Package 191/264HostnameOS / ArchBUILDCHECKBUILD BIN
quantsmooth 1.5.4
Jan Oosting
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/quantsmooth
Last Changed Rev: 30914 / Revision: 30951
Last Changed Date: 2008-04-08 08:24:36 -0700 (Tue, 08 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK [ WARNINGS ] OK 
Package: quantsmooth
Version: 1.5.4
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check quantsmooth_1.5.4.tar.gz
StartedAt: 2008-04-09 06:34:08 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 06:35:06 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 58.4 seconds
RetCode: 0
Status: WARNINGS
CheckDir: quantsmooth.Rcheck
Warnings: 2

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.2-bioc/meat/quantsmooth.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ASCII
* checking for file 'quantsmooth/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'quantsmooth' version '1.5.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'quantsmooth' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  grid
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
grid.chromosome: no visible binding for global variable 'chrom.bands'
lengthChromosome: no visible binding for global variable 'chrom.bands'
paintCytobands: no visible binding for global variable 'chrom.bands'
position2Cytoband: no visible binding for global variable 'chrom.bands'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  grid.chromosome position2Cytoband
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating quantsmooth-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating quantsmooth-manual.tex ... OK
* checking quantsmooth-manual.tex using pdflatex ... OK

WARNING: There were 2 warnings, see
  /Users/biocbuild/bbs-2.2-bioc/meat/quantsmooth.Rcheck/00check.log
for details

quantsmooth.Rcheck/00install.out:

* Installing *source* package 'quantsmooth' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: quantreg
Loading required package: SparseM
Package SparseM (0.77) loaded.  To cite, see citation("SparseM")
Loading required package: lodplot
Loading required package: grid
** help
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
 >>> Building/Updating help pages for package 'quantsmooth'
     Formats: text html latex example 
  Chromosome14                      text    html    latex
  drawSimpleChrom                   text    html    latex   example
  getChangedIdx                     text    html    latex
  getChangedRegions                 text    html    latex   example
  getLambdaMin                      text    html    latex   example
  lengthChromosome                  text    html    latex   example
  numericCHR                        text    html    latex   example
  paintCytobands                    text    html    latex   example
  plotChromosome                    text    html    latex
  plotSmoothed                      text    html    latex   example
  prepareGenomePlot                 text    html    latex
  quantsmooth                       text    html    latex   example
  quantsmooth.cv                    text    html    latex   example
  quantsmooth.seg                   text    html    latex   example
  scaleto                           text    html    latex
** building package indices ...
* DONE (quantsmooth)