BiostringsCinterfaceDemo 0.1.2
H. Pages
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiostringsCinterfaceDemo | | Last Changed Rev: 30788 / Revision: 30951 | | Last Changed Date: 2008-04-01 16:41:29 -0700 (Tue, 01 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | WARNINGS | [ OK ] |
INSTALLATION WITH 'R CMD INSTALL BiostringsCinterfaceDemo_0.1.2.tar.gz'
* Installing to library 'BiostringsCinterfaceDemo.buildbin-libdir'
* Installing *source* package 'BiostringsCinterfaceDemo' ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -march=nocona -Wall -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -march=nocona -Wall -c R_init_BiostringsCinterfaceDemo.c -o R_init_BiostringsCinterfaceDemo.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -march=nocona -Wall -c alphabet_by_cycle.c -o alphabet_by_cycle.o
alphabet_by_cycle.c: In function 'alphabet_by_cycle':
alphabet_by_cycle.c:51: warning: 'decode' may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -march=nocona -Wall -c read_fasta_demo12.c -o read_fasta_demo12.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -march=nocona -Wall -c read_fasta_demo3.c -o read_fasta_demo3.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -march=nocona -Wall -c read_solexa_sequence.c -o read_solexa_sequence.o
read_solexa_sequence.c: In function 'read_solexa_fasta':
read_solexa_sequence.c:186: warning: unused variable 'nms'
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -march=nocona -Wall -c test.c -o test.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -march=nocona -Wall -c utils.c -o utils.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BiostringsCinterfaceDemo.so Biostrings_stubs.o R_init_BiostringsCinterfaceDemo.o alphabet_by_cycle.o read_fasta_demo12.o read_fasta_demo3.o read_solexa_sequence.o test.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c R_init_BiostringsCinterfaceDemo.c -o R_init_BiostringsCinterfaceDemo.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c alphabet_by_cycle.c -o alphabet_by_cycle.o
alphabet_by_cycle.c: In function 'alphabet_by_cycle':
alphabet_by_cycle.c:51: warning: 'decode' may be used uninitialized in this function
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c read_fasta_demo12.c -o read_fasta_demo12.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c read_fasta_demo3.c -o read_fasta_demo3.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c read_solexa_sequence.c -o read_solexa_sequence.o
read_solexa_sequence.c: In function 'read_solexa_fasta':
read_solexa_sequence.c:186: warning: unused variable 'nms'
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c test.c -o test.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c utils.c -o utils.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BiostringsCinterfaceDemo.so Biostrings_stubs.o R_init_BiostringsCinterfaceDemo.o alphabet_by_cycle.o read_fasta_demo12.o read_fasta_demo3.o read_solexa_sequence.o test.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c R_init_BiostringsCinterfaceDemo.c -o R_init_BiostringsCinterfaceDemo.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c alphabet_by_cycle.c -o alphabet_by_cycle.o
alphabet_by_cycle.c: In function 'alphabet_by_cycle':
alphabet_by_cycle.c:51: warning: 'decode' may be used uninitialized in this function
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c read_fasta_demo12.c -o read_fasta_demo12.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c read_fasta_demo3.c -o read_fasta_demo3.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c read_solexa_sequence.c -o read_solexa_sequence.o
read_solexa_sequence.c: In function 'read_solexa_fasta':
read_solexa_sequence.c:186: warning: unused variable 'nms'
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c test.c -o test.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Biostrings/include" -fPIC -g -O2 -Wall -c utils.c -o utils.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BiostringsCinterfaceDemo.so Biostrings_stubs.o R_init_BiostringsCinterfaceDemo.o alphabet_by_cycle.o read_fasta_demo12.o read_fasta_demo3.o read_solexa_sequence.o test.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** inst
** help
>>> Building/Updating help pages for package 'BiostringsCinterfaceDemo'
Formats: text html latex example
SolexaSequenceQ-class text html latex example
alphabetByCycle text html latex example
read.fasta.demo text html latex example
readSolexaQ text html latex example
utilities text html latex example
** building package indices ...
* DONE (BiostringsCinterfaceDemo)