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Package 206/251HostnameOS / ArchBUILDCHECKBUILD BIN
rsbml 1.5.0
Michael Lawrence
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rsbml
Last Changed Rev: 28215 / Revision: 29143
Last Changed Date: 2007-10-24 23:39:53 -0700 (Wed, 24 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  WARNINGS [ OK ]
Package: rsbml
Version: 1.5.0
Command: D:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD INSTALL --build --library=rsbml.buildbin-libdir rsbml_1.5.0.tar.gz
StartedAt: 2007-12-11 09:12:43 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 09:13:38 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 54.8 seconds
RetCode: 0
Status: OK
PackageFile: rsbml_1.5.0.zip
PackageFileSize: 1.202 MiB

Command output

installing R.css in D:/biocbld/bbs-2.2-bioc/meat/rsbml.buildbin-libdir

Using auto-selected zip options ' rsbml-HELP=ziponly'

---------- Making package rsbml ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making check.d from check.c
making doc.d from doc.c
making dom.d from dom.c
making graph.d from graph.c
making init.d from init.c
making io.d from io.c
gcc  -std=gnu99  -ID:/biocbld/bbs-2.2-bioc/R/include   -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.2-bioc/R/include  -O3 -Wall  -c check.c -o check.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
                 from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
                 from rsbml.h:4,
                 from check.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning 
gcc  -std=gnu99  -ID:/biocbld/bbs-2.2-bioc/R/include   -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.2-bioc/R/include  -O3 -Wall  -c doc.c -o doc.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
                 from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
                 from rsbml.h:4,
                 from doc.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning 
gcc  -std=gnu99  -ID:/biocbld/bbs-2.2-bioc/R/include   -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.2-bioc/R/include  -O3 -Wall  -c dom.c -o dom.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
                 from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
                 from rsbml.h:4,
                 from dom.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning 
gcc  -std=gnu99  -ID:/biocbld/bbs-2.2-bioc/R/include   -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.2-bioc/R/include  -O3 -Wall  -c graph.c -o graph.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
                 from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
                 from rsbml.h:4,
                 from graph.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning 
gcc  -std=gnu99  -ID:/biocbld/bbs-2.2-bioc/R/include   -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.2-bioc/R/include  -O3 -Wall  -c init.c -o init.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
                 from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
                 from rsbml.h:4,
                 from init.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning 
gcc  -std=gnu99  -ID:/biocbld/bbs-2.2-bioc/R/include   -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.2-bioc/R/include  -O3 -Wall  -c io.c -o io.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
                 from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
                 from rsbml.h:4,
                 from io.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning 
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I D:/biocbld/bbs-2.2-bioc/R/include  -i rsbml_res.rc -o rsbml_res.o
gcc  -std=gnu99  -shared -s  -o rsbml.dll rsbml.def check.o doc.o dom.o graph.o init.o io.o rsbml_res.o  -LD:/biocbld/bbs-2.2-bioc/R/bin -LC:/SBML/libsbml-2.3.4-expat/win32/bin -lsbml   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package rsbml for lazy loading
Loading required package: graph
New generic for "curve" does not agree with implicit generic from package "graphics"; a new generic will be assigned with package "rsbml"
New generic for "delay" does not agree with implicit generic from package "base"; a new generic will be assigned with package "rsbml"
New generic for "scale" does not agree with implicit generic from package "base"; a new generic will be assigned with package "rsbml"
  installing man source files
  installing indices
  installing help
Note: removing empty section \description
Note: removing empty section \description
 >>> Building/Updating help pages for package 'rsbml'
     Formats: text html latex example chm 
  AlgebraicRule-class               text    html    latex           chm
  AssignmentRule-class              text    html    latex           chm
  BoundingBox-class                 text    html    latex           chm
  Compartment-class                 text    html    latex           chm
  CompartmentGlyph-class            text    html    latex           chm
  CompartmentType-class             text    html    latex           chm
  CompartmentVolumeRule-class       text    html    latex           chm
  Constraint-class                  text    html    latex           chm
  CubicBezier-class                 text    html    latex           chm
  Curve-class                       text    html    latex           chm
  Delay-class                       text    html    latex           chm
  Dimensions-class                  text    html    latex           chm
  Event-class                       text    html    latex           chm
  EventAssignment-class             text    html    latex           chm
  FunctionDefinition-class          text    html    latex           chm
  GraphicalObject-class             text    html    latex           chm
  InitialAssignment-class           text    html    latex           chm
  KineticLaw-class                  text    html    latex           chm
  Layout-class                      text    html    latex           chm
  LineSegment-class                 text    html    latex           chm
  Model-class                       text    html    latex           chm
  ModifierSpeciesReference-class    text    html    latex           chm
  Parameter-class                   text    html    latex           chm
  ParameterRule-class               text    html    latex           chm
  Point-class                       text    html    latex           chm
  RateRule-class                    text    html    latex           chm
  Reaction-class                    text    html    latex           chm
  ReactionGlyph-class               text    html    latex           chm
  Rule-class                        text    html    latex           chm
  SBML-class                        text    html    latex   example chm
  SBMLDocument-class                text    html    latex   example chm
  SBase-class                       text    html    latex           chm
  SimpleSpeciesReference-class      text    html    latex           chm
  Species-class                     text    html    latex           chm
  SpeciesConcentrationRule-class    text    html    latex           chm
  SpeciesGlyph-class                text    html    latex           chm
  SpeciesReference-class            text    html    latex           chm
  SpeciesReferenceGlyph-class       text    html    latex           chm
  SpeciesType-class                 text    html    latex           chm
  StoichiometryMath-class           text    html    latex           chm
  TextGlyph-class                   text    html    latex           chm
  Trigger-class                     text    html    latex           chm
  Unit-class                        text    html    latex           chm
  UnitDefinition-class              text    html    latex           chm
  read                              text    html    latex   example chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.2572\rsbml\chm\rsbml.chm





Compile time: 0 minutes, 0 seconds

46	Topics

618	Local links

44	Internet links

1	Graphic





Created d:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.2572\rsbml\chm\rsbml.chm, 60,036 bytes

Compression decreased file by 254,705 bytes.

  adding MD5 sums

packaged installation of package 'rsbml' as rsbml_1.5.0.zip
* DONE (rsbml)