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Package 106/251HostnameOS / ArchBUILDCHECKBUILD BIN
hexbin 1.13.0
Nicholas Lewin-Koh
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/hexbin
Last Changed Rev: 27716 / Revision: 29143
Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  ERROR  skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
wellington Linux (openSUSE 10.3) / i686  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
lemming Windows Server 2003 (32-bit) / x64 [ ERROR ] skipped  skipped 
Package: hexbin
Version: 1.13.0
Command: D:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD build hexbin
StartedAt: 2007-12-11 03:08:55 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 03:09:41 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 45.9 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'hexbin/DESCRIPTION' ... OK
* preparing 'hexbin':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.2-bioc/tmpdir/Rinst299299029


---------- Making package hexbin ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
gfortran   -O3  -c hbin.f -o hbin.o
gfortran   -O3  -c hcell.f -o hcell.o
gfortran   -O3  -c herode.f -o herode.o
gfortran   -O3  -c hsm.f -o hsm.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.2-bioc/R/include  -i hexbin_res.rc -o hexbin_res.o
gcc  -std=gnu99  -shared -s  -o hexbin.dll hexbin.def hbin.o hcell.o herode.o hsm.o hexbin_res.o  -Ld:/biocbld/bbs-2.2-bioc/R/bin   -lgfortran -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package hexbin for lazy loading
Loading required package: grid
Loading required package: lattice
Creating a new generic function for "plot" in "hexbin"
Creating a new generic function for "summary" in "hexbin"
  installing man source files
  installing indices
  not zipping data
  installing help
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \description
Note: removing empty section \examples
Note: removing empty section \seealso
Note: removing empty section \description
Note: removing empty section \examples
Note: removing empty section \seealso
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \description
Note: removing empty section \note
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \description
Note: removing empty section \note
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'hexbin'
     Formats: text html latex example chm 
  NHANES                            text    html    latex   example chm
  colramp                           text    html    latex   example chm
  erode.hexbin                      text    html    latex   example chm
  getHMedian                        text    html    latex           chm
  gplot.hexbin                      text    html    latex   example chm
  grid.hexagons                     text    html    latex   example chm
  grid.hexlegend                    text    html    latex   example chm
  hboxplot                          text    html    latex   example chm
  hcell2xy                          text    html    latex   example chm
  hcell2xyInt                       text    html    latex   example chm
  hdiffplot                         text    html    latex   example chm
  hexGraphPaper                     text    html    latex   example chm
  hexList                           text    html    latex           chm
  hexMA.loess                       text    html    latex   example chm
  hexTapply                         text    html    latex   example chm
  hexVP-class                       text    html    latex   example chm
  hexVP.abline                      text    html    latex           chm
  hexViewport                       text    html    latex   example chm
  hexbin                            text    html    latex   example chm
  hexbinplot                        text    html    latex   example chm
  hexplom                           text    html    latex   example chm
  hexpolygon                        text    html    latex   example chm
  hsmooth-methods                   text    html    latex           chm
  inout.hex                         text    html    latex           chm
  list2hexList                      text    html    latex           chm
  old-classes                       text    html    latex           chm
  optShape                          text    html    latex   example chm
  panel.hexboxplot                  text    html    latex   example chm
  panel.hexgrid                     text    html    latex           chm
  panel.hexloess                    text    html    latex   example chm
  plotMAhex                         text    html    latex   example chm
  pushHexport                       text    html    latex           chm
  smooth.hexbin                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.2-bioc\meat\hexbin\chm\hexbin.chm





Compile time: 0 minutes, 0 seconds

34	Topics

246	Local links

2	Internet links

1	Graphic





Created d:\biocbld\bbs-2.2-bioc\meat\hexbin\chm\hexbin.chm, 83,725 bytes

Compression decreased file by 94,769 bytes.

  adding MD5 sums

* DONE (hexbin)
* creating vignettes ... ERROR
Loading required package: grid
Loading required package: lattice
[1] 0
[1] 0.5
[1] "1:2"
[1] 0
[1] 0.5
[1] "1:2"
Loading required package: limma

Error: processing vignette 'hexagon_binning.Rnw' failed with diagnostics:
 chunk 9 (label=marray1) 
Error in MA$genes : $ operator not defined for this S4 class
In addition: Warning messages:
1: In if (nchar(main) > 0) grid.text(main, y = unit(1, "npc") + unit(1.5,  :
  the condition has length > 1 and only the first element will be used
2: In if (nchar(main) > 0) grid.text(main, y = unit(1, "npc") + unit(1.5,  :
  the condition has length > 1 and only the first element will be used
3: In if (nchar(main) > 0) grid.text(main, y = unit(1, "npc") + unit(1.5,  :
  the condition has length > 1 and only the first element will be used
Execution halted