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Package 200/251HostnameOS / ArchBUILDCHECKBUILD BIN
Rintact 1.1.4
Tony Chiang
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rintact
Last Changed Rev: 28674 / Revision: 29143
Last Changed Date: 2007-11-13 05:30:16 -0800 (Tue, 13 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ OK ]
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
lemming Windows Server 2003 (32-bit) / x64  ERROR  skipped  skipped 
Package: Rintact
Version: 1.1.4
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check Rintact_1.1.4.tar.gz
StartedAt: 2007-12-11 04:47:43 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 04:48:29 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 45.6 seconds
RetCode: 0
Status: OK
CheckDir: Rintact.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/Rintact.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'Rintact/DESCRIPTION' ... OK
* this is package 'Rintact' version '1.1.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rintact' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
eListHandler : startElement: no visible binding for '<<-' assignment to
  ‘curEL’
eListHandler : startElement: no visible binding for global variable
  ‘curEL’
eListHandler : text: no visible binding for global variable ‘curEL’
intactXML2Graph: no visible global function definition for ‘genBPGraph’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating Rintact-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './SuppMat.tex' ...
LaTeX Warning: Citation `Ewing2007' on page 1 undefined on input line 62.
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './SuppMat.tex' ...
* creating Rintact-manual.tex ... OK
* checking Rintact-manual.tex ... OK

Rintact.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/Rintact.Rcheck
* Installing *source* package 'Rintact' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: XML
Loading required package: graph
Loading required package: hypergraph
** help
Note: removing empty section \references
 >>> Building/Updating help pages for package 'Rintact'
     Formats: text html latex example 
  bait                              text    html    latex   example
  complexEntry                      text    html    latex
  complexes                         text    html    latex   example
  eListHandler                      text    html    latex   example
  intactComplex                     text    html    latex
  intactGraph                       text    html    latex
  intactHyperGraph                  text    html    latex
  intactInteraction                 text    html    latex
  intactXML2Graph                   text    html    latex   example
  interactionEntry                  text    html    latex
  interactions                      text    html    latex   example
  interactors                       text    html    latex   example
  list2Matrix                       text    html    latex   example
  organismName                      text    html    latex   example
  prey                              text    html    latex   example
  psi25interaction                  text    html    latex   example
  releaseDate                       text    html    latex   example
  taxId                             text    html    latex   example
  translateIntactID                 text    html    latex   example
** building package indices ...
* DONE (Rintact)