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Package 44/251HostnameOS / ArchBUILDCHECKBUILD BIN
CALIB 1.5.0
Hui Zhao
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CALIB
Last Changed Rev: 27716 / Revision: 29143
Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64 [ OK ] OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: CALIB
Version: 1.5.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build CALIB
StartedAt: 2007-12-11 02:29:32 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 02:29:53 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 21.5 seconds
RetCode: 0
Status: OK
PackageFile: CALIB_1.5.0.tar.gz
PackageFileSize: 2.319 MiB

Command output

* checking for file 'CALIB/DESCRIPTION' ... OK
* preparing 'CALIB':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
/tmp/Rinst289780422
* Installing *source* package 'CALIB' ...
** libs
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c Design.cpp -o Design.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c Estimation.cpp -o Estimation.o
Estimation.cpp: In function ‘SEXPREC* estimation(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)’:
Estimation.cpp:144: warning: deprecated conversion from string constant to ‘char*’
Estimation.cpp:144: warning: deprecated conversion from string constant to ‘char*’
Estimation.cpp:144: warning: deprecated conversion from string constant to ‘char*’
Estimation.cpp:144: warning: deprecated conversion from string constant to ‘char*’
Estimation.cpp:144: warning: deprecated conversion from string constant to ‘char*’
Estimation.cpp:144: warning: deprecated conversion from string constant to ‘char*’
Estimation.cpp:144: warning: deprecated conversion from string constant to ‘char*’
Estimation.cpp:144: warning: deprecated conversion from string constant to ‘char*’
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c NormalizedData.cpp -o NormalizedData.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c ParameterofOneArray.cpp -o ParameterofOneArray.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c RawDataofOneArray.cpp -o RawDataofOneArray.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c SpikeofOneArray.cpp -o SpikeofOneArray.o
g++ -shared -L/usr/local/lib64 -o CALIB.so Design.o Estimation.o NormalizedData.o ParameterofOneArray.o RawDataofOneArray.o SpikeofOneArray.o   -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: limma
** help
 >>> Building/Updating help pages for package 'CALIB'
     Formats: text html latex example 
  ParameterList-class               text    html    latex
  RG                                text    html    latex   example
  RGList_CALIB-class                text    html    latex
  SpikeList-class                   text    html    latex
  adjustP2                          text    html    latex   example
  calibReadMe                       text    html    latex   example
  cbind                             text    html    latex   example
  dim                               text    html    latex   example
  dimnames                          text    html    latex   example
  estimateParameter                 text    html    latex   example
  getColClasses                     text    html    latex   example
  merge                             text    html    latex   example
  normalizeData                     text    html    latex   example
  normdata                          text    html    latex   example
  parameter                         text    html    latex   example
  plotNormalizedData                text    html    latex   example
  plotSpikeCI                       text    html    latex   example
  plotSpikeHI                       text    html    latex   example
  plotSpikeRG                       text    html    latex   example
  plotSpikeSpotError                text    html    latex   example
  read.rg                           text    html    latex   example
  read.spike                        text    html    latex
  spike                             text    html    latex   example
  subsetting                        text    html    latex   example
** building package indices ...
* DONE (CALIB)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'CALIB_1.5.0.tar.gz'