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BioC experimental data: CHECK report for XhybCasneuf on moscato2

This page was generated on 2014-10-04 17:41:17 -0700 (Sat, 04 Oct 2014).

Package 191/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
XhybCasneuf 1.2.0
Tineke Casneuf
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/XhybCasneuf
Last Changed Rev: 2799 / Revision: 3055
Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ WARNINGS ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: XhybCasneuf
Version: 1.2.0
Command: rm -rf XhybCasneuf.buildbin-libdir && mkdir XhybCasneuf.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=XhybCasneuf.buildbin-libdir XhybCasneuf_1.2.0.tar.gz >XhybCasneuf-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=XhybCasneuf.buildbin-libdir --install="check:XhybCasneuf-install.out" --force-multiarch --no-vignettes --timings XhybCasneuf_1.2.0.tar.gz
StartedAt: 2014-10-04 11:09:57 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 11:14:03 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 246.9 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: XhybCasneuf.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf XhybCasneuf.buildbin-libdir && mkdir XhybCasneuf.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=XhybCasneuf.buildbin-libdir XhybCasneuf_1.2.0.tar.gz >XhybCasneuf-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=XhybCasneuf.buildbin-libdir --install="check:XhybCasneuf-install.out" --force-multiarch --no-vignettes --timings XhybCasneuf_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/XhybCasneuf.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'XhybCasneuf/DESCRIPTION' ... OK
* this is package 'XhybCasneuf' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'XhybCasneuf' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'RColorBrewer' 'affy' 'ath1121501cdf' 'methods' 'tinesath1cdf'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                         old_size new_size compress
  AffysTissue.noBl.rda      202Kb    154Kb       xz
  AffysTissue.rda           741Kb    491Kb       xz
  AffysTissueMC.rda         886Kb    591Kb       xz
  CustomsTissue.noBl.rda    153Kb    120Kb       xz
  CustomsTissue.rda         552Kb    372Kb       xz
  CustomsTissueMC.rda       688Kb    465Kb       xz
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [4s] OK
** running examples for arch 'x64' ... [7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.14-data-experiment/meat/XhybCasneuf.Rcheck/00check.log'
for details.

XhybCasneuf.Rcheck/00install.out:


install for i386

* installing *source* package 'XhybCasneuf' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'utils::head' when loading 'ath1121501cdf'
Warning: replacing previous import by 'utils::tail' when loading 'ath1121501cdf'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by 'utils::head' when loading 'ath1121501cdf'
Warning: replacing previous import by 'utils::tail' when loading 'ath1121501cdf'

install for x64

* installing *source* package 'XhybCasneuf' ...
** testing if installed package can be loaded
Warning: replacing previous import by 'utils::head' when loading 'ath1121501cdf'
Warning: replacing previous import by 'utils::tail' when loading 'ath1121501cdf'
* MD5 sums
packaged installation of 'XhybCasneuf' as XhybCasneuf_1.2.0.zip
* DONE (XhybCasneuf)

XhybCasneuf.Rcheck/examples_i386/XhybCasneuf-Ex.timings:

nameusersystemelapsed
AffysTissue0.330.020.34
CustomsTissue0.220.000.22
XhybExamples-class0.040.000.05
ex10.050.000.05
runSimulation0.030.000.03

XhybCasneuf.Rcheck/examples_x64/XhybCasneuf-Ex.timings:

nameusersystemelapsed
AffysTissue0.420.000.42
CustomsTissue0.260.000.27
XhybExamples-class0.050.020.72
ex10.040.000.04
runSimulation0.050.000.05