Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S [T] U  V  W  X  Y  Z 

BioC 2.14: CHECK report for trackViewer on moscato2

This page was generated on 2014-10-08 08:56:24 -0700 (Wed, 08 Oct 2014).

Package 786/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trackViewer 1.0.2
Jianhong Ou
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/trackViewer
Last Changed Rev: 94372 / Revision: 95116
Last Changed Date: 2014-09-22 11:23:44 -0700 (Mon, 22 Sep 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: trackViewer
Version: 1.0.2
Command: rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=trackViewer.buildbin-libdir trackViewer_1.0.2.tar.gz >trackViewer-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=trackViewer.buildbin-libdir --install="check:trackViewer-install.out" --force-multiarch --no-vignettes --timings trackViewer_1.0.2.tar.gz
StartedAt: 2014-10-08 05:46:52 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 05:56:08 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 556.1 seconds
RetCode: 0
Status:  OK  
CheckDir: trackViewer.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=trackViewer.buildbin-libdir trackViewer_1.0.2.tar.gz >trackViewer-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=trackViewer.buildbin-libdir --install="check:trackViewer-install.out" --force-multiarch --no-vignettes --timings trackViewer_1.0.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/trackViewer.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'trackViewer/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'trackViewer' version '1.0.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'trackViewer' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
interactiveViewer: possible error in x11(type = "Xlib"): unused
  argument (type = "Xlib")
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [68s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
trackViewer-package 17.47   0.35   17.81
geneModelFromTxdb   15.98   0.46   16.63
viewTracks          12.48   0.04   12.53
** running examples for arch 'x64' ... [65s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
trackViewer-package 17.18    0.2   17.38
geneModelFromTxdb   14.98    0.3   15.28
viewTracks          11.76    0.0   11.76
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [16s]
 [17s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [16s]
 [16s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.14-bioc/meat/trackViewer.Rcheck/00check.log'
for details.

trackViewer.Rcheck/00install.out:


install for i386

* installing *source* package 'trackViewer' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'trackViewer' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'trackViewer' as trackViewer_1.0.2.zip
* DONE (trackViewer)

trackViewer.Rcheck/examples_i386/trackViewer-Ex.timings:

nameusersystemelapsed
addArrowMark0.010.000.01
addGuideLine0.020.000.02
coverageGR1.090.021.10
geneModelFromTxdb15.98 0.4616.63
getCurTrackViewport0.020.000.01
importBam1.250.001.25
importScore0.950.000.95
interactiveViewer000
optimizeStyle1.260.001.26
track0.130.000.13
trackViewer-package17.47 0.3517.81
trackViewerStyle000
viewTracks12.48 0.0412.53

trackViewer.Rcheck/examples_x64/trackViewer-Ex.timings:

nameusersystemelapsed
addArrowMark0.010.000.02
addGuideLine0.020.000.01
coverageGR0.980.031.02
geneModelFromTxdb14.98 0.3015.28
getCurTrackViewport000
importBam0.970.000.97
importScore0.990.000.99
interactiveViewer000
optimizeStyle1.330.011.34
track0.120.000.13
trackViewer-package17.18 0.2017.38
trackViewerStyle000
viewTracks11.76 0.0011.76