BioC 2.14: CHECK report for supraHex on zin2

Package: supraHex

Version: 1.2.0

Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.2.0.tar.gz

StartedAt: 2014-10-08 03:09:07 -0700 (Wed, 08 Oct 2014)

EndedAt: 2014-10-08 03:09:45 -0700 (Wed, 08 Oct 2014)

EllapsedTime: 38.0 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-2.14-bioc/meat/supraHex.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘hexbin’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/11s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.14-bioc/meat/supraHex.Rcheck/00check.log’
for details.

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.076	0.000	0.077
sCompReorder	1.728	0.000	1.733
sDistance	0.084	0.004	0.090
sDmat	0.120	0.000	0.117
sDmatCluster	0.184	0.000	0.185
sDmatMinima	0.156	0.000	0.156
sHexDist	0.008	0.000	0.005
sHexGrid	0.004	0.000	0.003
sInitial	0.004	0.000	0.004
sMapOverlay	0.180	0.008	0.187
sNeighAny	0.008	0.000	0.008
sNeighDirect	0.008	0.000	0.005
sPipeline	0.312	0.000	0.313
sTopology	0.024	0.000	0.022
sTrainBatch	0.032	0.008	0.040
sTrainSeq	0.708	0.000	0.709
sTrainology	0.008	0.000	0.005
sWriteData	0.176	0.004	0.182
visColoralpha	0.008	0.000	0.007
visColorbar	0.052	0.000	0.051
visColormap	0.008	0.000	0.008
visCompReorder	1.364	0.012	1.381
visDmatCluster	0.224	0.004	0.227
visDmatHeatmap	0.192	0.000	0.194
visHeatmap	0.108	0.000	0.111
visHeatmapAdv	0.524	0.000	0.528
visHexComp	0.108	0.004	0.115
visHexGrid	0.100	0.000	0.101
visHexMapping	1.552	0.000	1.555
visHexMulComp	0.648	0.000	0.652
visHexPattern	1.308	0.012	1.319
visKernels	0.008	0.004	0.011
visTreeBootstrap	0.208	0.004	0.212
visVp	0.028	0.000	0.029