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BioC 2.14: BUILD BIN report for simpleaffy on morelia

This page was generated on 2014-10-08 09:02:10 -0700 (Wed, 08 Oct 2014).

Package 728/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
simpleaffy 2.40.0
Crispin Miller
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/simpleaffy
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]

Summary

Package: simpleaffy
Version: 2.40.0
Command: rm -rf simpleaffy.buildbin-libdir && mkdir simpleaffy.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh simpleaffy_2.40.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R simpleaffy.buildbin-libdir
StartedAt: 2014-10-08 03:11:13 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 03:11:28 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 15.2 seconds
RetCode: 0
Status:  OK 
PackageFile: simpleaffy_2.40.0.tgz
PackageFileSize: 376.1 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf simpleaffy.buildbin-libdir && mkdir simpleaffy.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh simpleaffy_2.40.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R simpleaffy.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=simpleaffy.buildbin-libdir simpleaffy_2.40.0.tar.gz'
>>>>>>> 

* installing *source* package ‘simpleaffy’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c simpleaffy.c -o simpleaffy.o
simpleaffy.c:440:30: warning: incompatible pointer types passing 'FILE *' (aka 'struct __sFILE *') to parameter of type 'const char *' [-Wincompatible-pointer-types]
    if(gn >= ngrid) REprintf(stderr,"Really ouch! %d %d\n",gn,ends[gn]);
                             ^˜˜˜˜˜
/usr/include/stdio.h:216:16: note: expanded from macro 'stderr'
#define stderr  __stderrp
                ^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Print.h:40:27: note: passing argument to parameter here
void REprintf(const char *, ...);
                          ^
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/simpleaffy.buildbin-libdir/simpleaffy/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (simpleaffy)


>>>>>>> 
>>>>>>> FIXING LINKS FOR simpleaffy.buildbin-libdir/simpleaffy/libs//simpleaffy.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "simpleaffy.buildbin-libdir/simpleaffy/libs//simpleaffy.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "simpleaffy.buildbin-libdir/simpleaffy/libs//simpleaffy.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "simpleaffy.buildbin-libdir/simpleaffy/libs//simpleaffy.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "simpleaffy.buildbin-libdir/simpleaffy/libs//simpleaffy.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "simpleaffy.buildbin-libdir/simpleaffy/libs//simpleaffy.so"