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BioC 2.14: BUILD BIN report for rqubic on petty

This page was generated on 2014-10-08 08:59:44 -0700 (Wed, 08 Oct 2014).

Package 685/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rqubic 1.10.0
Jitao David Zhang
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/rqubic
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: rqubic
Version: 1.10.0
Command: rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rqubic_1.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R rqubic.buildbin-libdir
StartedAt: 2014-10-08 01:32:42 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 01:32:53 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 10.7 seconds
RetCode: 0
Status:  OK 
PackageFile: rqubic_1.10.0.tgz
PackageFileSize: 336.3 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rqubic_1.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R rqubic.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=rqubic.buildbin-libdir rqubic_1.10.0.tar.gz'
>>>>>>> 

* installing *source* package ‘rqubic’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c bicluster.c -o bicluster.o
bicluster.c: In function ‘seed_intersect_r’:
bicluster.c:354: warning: suggest parentheses around assignment used as truth value
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c discretize.c -o discretize.o
rqubic.h:60: warning: ‘EDGELIST_ATT_NAME’ defined but not used
rqubic.h:61: warning: ‘MINCOL_ATT_NAME’ defined but not used
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c fib.c -o fib.o
rqubic.h:60: warning: ‘EDGELIST_ATT_NAME’ defined but not used
rqubic.h:61: warning: ‘MINCOL_ATT_NAME’ defined but not used
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c graph.c -o graph.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c rqubic.c -o rqubic.o
rqubic.h:60: warning: ‘EDGELIST_ATT_NAME’ defined but not used
rqubic.h:61: warning: ‘MINCOL_ATT_NAME’ defined but not used
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o rqubic.so bicluster.o discretize.o fib.o graph.o rqubic.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/rqubic.buildbin-libdir/rqubic/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rqubic)


>>>>>>> 
>>>>>>> FIXING LINKS FOR rqubic.buildbin-libdir/rqubic/libs//rqubic.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "rqubic.buildbin-libdir/rqubic/libs//rqubic.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "rqubic.buildbin-libdir/rqubic/libs//rqubic.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "rqubic.buildbin-libdir/rqubic/libs//rqubic.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "rqubic.buildbin-libdir/rqubic/libs//rqubic.so"