BioC 2.14: CHECK report for roar on moscato2

Package: roar

Version: 1.0.0

Command: rm -rf roar.buildbin-libdir && mkdir roar.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=roar.buildbin-libdir roar_1.0.0.tar.gz >roar-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=roar.buildbin-libdir --install="check:roar-install.out" --force-multiarch --no-vignettes --timings roar_1.0.0.tar.gz

StartedAt: 2014-10-08 04:43:44 -0700 (Wed, 08 Oct 2014)

EndedAt: 2014-10-08 04:48:35 -0700 (Wed, 08 Oct 2014)

EllapsedTime: 291.2 seconds

RetCode: 0

Status:  OK

CheckDir: roar.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf roar.buildbin-libdir && mkdir roar.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=roar.buildbin-libdir roar_1.0.0.tar.gz >roar-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=roar.buildbin-libdir --install="check:roar-install.out" --force-multiarch --no-vignettes --timings roar_1.0.0.tar.gz
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* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/roar.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'roar/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'roar' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'roar' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [15s] OK
** running examples for arch 'x64' ... [17s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [18s]
 [18s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [21s]
 [21s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'roar' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'roar' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'roar' as roar_1.0.0.zip
* DONE (roar)

name	user	system	elapsed
RoarDataset-class	0	0	0
RoarDataset-constructor	0.64	0.03	0.67
RoarDatasetFromFiles-constructor	0	0	0
computePvals-method	1.01	0.04	1.06
computeRoars-method	0.80	0.00	0.95
countPrePost-method	0.73	0.02	0.75
countResults-method	0.71	0.05	0.76
fpkmResults-method	0.67	0.09	0.76
pvalueFilter-method	0.75	0.03	0.80
standardFilter-method	0.79	0.00	0.81
totalResults-method	0.78	0.03	0.81

name	user	system	elapsed
RoarDataset-class	0	0	0
RoarDataset-constructor	0.65	0.07	0.72
RoarDatasetFromFiles-constructor	0	0	0
computePvals-method	1.17	0.03	1.20
computeRoars-method	0.84	0.01	0.86
countPrePost-method	0.80	0.07	0.86
countResults-method	0.87	0.03	0.91
fpkmResults-method	0.89	0.01	0.91
pvalueFilter-method	0.82	0.07	0.89
standardFilter-method	0.89	0.03	0.92
totalResults-method	0.88	0.03	0.90