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BioC 2.14: INSTALL report for rnaSeqMap on zin2

This page was generated on 2014-10-08 08:48:54 -0700 (Wed, 08 Oct 2014).

Package 674/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rnaSeqMap 2.20.0
Michal Okoniewski
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/rnaSeqMap
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64 [ OK ] OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: rnaSeqMap
Version: 2.20.0
Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD INSTALL rnaSeqMap
StartedAt: 2014-10-07 18:13:03 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 18:13:22 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 19.5 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD INSTALL rnaSeqMap
###
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* installing to library ‘/home/biocbuild/bbs-2.14-bioc/R/library’
* installing *source* package ‘rnaSeqMap’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c Rinit.c -o Rinit.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c gcoverage.c -o gcoverage.o
gcoverage.c: In function ‘gcoverage’:
gcoverage.c:7:31: warning: variable ‘nc’ set but not used [-Wunused-but-set-variable]
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c ghistogram.c -o ghistogram.o
ghistogram.c: In function ‘ghistogram’:
ghistogram.c:31:11: warning: operation on ‘k’ may be undefined [-Wsequence-point]
ghistogram.c:9:10: warning: variable ‘xa’ set but not used [-Wunused-but-set-variable]
ghistogram.c:8:23: warning: variable ‘nb’ set but not used [-Wunused-but-set-variable]
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c regionmining.c -o regionmining.o
regionmining.c: In function ‘avg’:
regionmining.c:12:4: warning: operation on ‘n’ may be undefined [-Wsequence-point]
regionmining.c: In function ‘regionmining’:
regionmining.c:22:18: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c splicingind.c -o splicingind.o
splicingind.c: In function ‘splicingind’:
splicingind.c:8:13: warning: variable ‘nb’ set but not used [-Wunused-but-set-variable]
gcc -std=gnu99 -shared -L/usr/local/lib -o rnaSeqMap.so Rinit.o gcoverage.o ghistogram.o regionmining.o splicingind.o -L/home/biocbuild/bbs-2.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-2.14-bioc/R/library/rnaSeqMap/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rnaSeqMap)