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BioC 2.14: BUILD report for rTRM on morelia

This page was generated on 2014-10-08 09:06:32 -0700 (Wed, 08 Oct 2014).

Package 698/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rTRM 1.2.0
Diego Diez
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/rTRM
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK [ OK ] OK  OK 

Summary

Package: rTRM
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rTRM
StartedAt: 2014-10-07 20:19:41 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 20:20:54 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 72.9 seconds
RetCode: 0
Status:  OK 
PackageFile: rTRM_1.2.0.tar.gz
PackageFileSize: 2.957 MiB

Command output

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###
### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rTRM
###
##############################################################################
##############################################################################


* checking for file ‘rTRM/DESCRIPTION’ ... OK
* preparing ‘rTRM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX Loading required package: igraph
...
Creating pdf output from LaTeX ...

This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013)
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entering extended mode
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LaTeX2e <2011/06/27>
Babel <3.9f> and hyphenation patterns for 78 languages loaded.
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Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
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\T1/ptm/m/n/10 rich, biomaRt,knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8.mas
ked, org.Hs.eg.db, org.Mm.eg.db,ggplot2  
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 []\T1/fi4/m/n/10 plotGraph(g, layout = layout.fruchterman.reingold, mar = .5, 
vertex.pch = 21, vertex.cex, vertex.col, vertex.bg, vertex.lwd, edge.col, edge.
lwd, edge.lty, label = TRUE, label.col, label.cex, label.pos = NULL, label.offs
et = 1.5, adjust.label.col = FALSE, normalize.layout = TRUE)[] 
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 []\T1/fi4/m/n/10 plotTRM(g, layout = layout.fruchterman.reingold, mar = .5, ve
rtex.col, vertex.cex, vertex.lwd, edge.col, edge.lwd, edge.lty, label = TRUE, l
abel.cex, label.col, label.pos = NULL, label.offset = 1.5, adjust.label.col = F
ALSE, normalize.layout = TRUE)[] 
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 []\T1/fi4/m/n/10 processBiogrid(dblist, org = "human", simplify = TRUE, type =
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</usr/local/texlive/2013/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on Rd2.pdf (19 pages, 96767 bytes).
Transcript written on Rd2.log.
This is makeindex, version 2.15 [TeX Live 2013] (kpathsea + Thai support).
Scanning input file ./Rd2.idx....done (37 entries accepted, 0 rejected).
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Generating output file ./Rd2.ind....done (71 lines written, 0 warnings).
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LaTeX2e <2011/06/27>
Babel <3.9f> and hyphenation patterns for 78 languages loaded.
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Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
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enc/dvips/inconsolata/fi4-ec.enc}</usr/local/texlive/2013/texmf-dist/fonts/type
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