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BioC 2.14: INSTALL report for qpgraph on moscato2

This page was generated on 2014-10-08 08:52:46 -0700 (Wed, 08 Oct 2014).

Package 617/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qpgraph 1.20.2
Robert Castelo
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/qpgraph
Last Changed Rev: 93135 / Revision: 95116
Last Changed Date: 2014-08-01 20:41:40 -0700 (Fri, 01 Aug 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: qpgraph
Version: 1.20.2
Command: C:\cygwin\bin\curl.exe -O http://zin2/BBS/2.14/bioc/src/contrib/qpgraph_1.20.2.tar.gz && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch qpgraph_1.20.2.tar.gz && rm qpgraph_1.20.2.tar.gz
StartedAt: 2014-10-07 18:38:37 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 18:39:53 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 76.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin2/BBS/2.14/bioc/src/contrib/qpgraph_1.20.2.tar.gz && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch qpgraph_1.20.2.tar.gz && rm qpgraph_1.20.2.tar.gz
###
##############################################################################
##############################################################################




install for i386

* installing to library 'E:/biocbld/bbs-2.14-bioc/R/library'
* installing *source* package 'qpgraph' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c cliquer.c -o cliquer.o
cliquer.c: In function 'clique_print_time':
cliquer.c:1802:8: warning: unused variable 'fp' [-Wunused-variable]
cliquer.c: In function 'clique_print_time_always':
cliquer.c:1851:8: warning: unused variable 'fp' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c graph.c -o graph.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'stat_mis':
qpgraph.c:4241:19: warning: unused variable 'k' [-Wunused-variable]
qpgraph.c:4241:17: warning: unused variable 'j' [-Wunused-variable]
qpgraph.c:4241:15: warning: unused variable 'i' [-Wunused-variable]
qpgraph.c: In function 'lr_em':
qpgraph.c:4283:15: warning: unused variable 'Y_j' [-Wunused-variable]
qpgraph.c:4281:39: warning: variable 'sufStats_ij' set but not used [-Wunused-but-set-variable]
qpgraph.c:4281:27: warning: variable 'sufStats_j' set but not used [-Wunused-but-set-variable]
qpgraph.c:4281:15: warning: variable 'sufStats_i' set but not used [-Wunused-but-set-variable]
qpgraph.c: In function 'ssd_A':
qpgraph.c:7969:17: warning: unused variable 'm' [-Wunused-variable]
qpgraph.c:7969:15: warning: unused variable 'k' [-Wunused-variable]
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:8098:5: warning: assignment from incompatible pointer type [enabled by default]
qpgraph.c: In function 'qp_ci_test_hmgm.isra.9':
qpgraph.c:3961:36: warning: 'rss1' may be used uninitialized in this function [-Wuninitialized]
qpgraph.c:3688:11: note: 'rss1' was declared here
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c reorder.c -o reorder.o
gcc -m32 -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LE:/biocbld/BBS-2˜1.14-/R/bin/i386 -lRlapack -LE:/biocbld/BBS-2˜1.14-/R/bin/i386 -lRblas -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.14-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.14-bioc/R/library/qpgraph/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function from function 'rmvnorm' in package 'qpgraph'
Creating a generic function from function 'sim.cross' in package 'qpgraph'
** help
*** installing help indices
** building package indices
** installing vignettes
   'qpTxRegNet.Rnw' 
   'qpgraphSimulate.Rnw' 
** testing if installed package can be loaded

install for x64

* installing to library 'E:/biocbld/bbs-2.14-bioc/R/library'
* installing *source* package 'qpgraph' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c cliquer.c -o cliquer.o
cliquer.c: In function 'clique_print_time':
cliquer.c:1802:8: warning: unused variable 'fp' [-Wunused-variable]
cliquer.c: In function 'clique_print_time_always':
cliquer.c:1851:8: warning: unused variable 'fp' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c graph.c -o graph.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'stat_mis':
qpgraph.c:4241:19: warning: unused variable 'k' [-Wunused-variable]
qpgraph.c:4241:17: warning: unused variable 'j' [-Wunused-variable]
qpgraph.c:4241:15: warning: unused variable 'i' [-Wunused-variable]
qpgraph.c: In function 'lr_em':
qpgraph.c:4283:15: warning: unused variable 'Y_j' [-Wunused-variable]
qpgraph.c:4281:39: warning: variable 'sufStats_ij' set but not used [-Wunused-but-set-variable]
qpgraph.c:4281:27: warning: variable 'sufStats_j' set but not used [-Wunused-but-set-variable]
qpgraph.c:4281:15: warning: variable 'sufStats_i' set but not used [-Wunused-but-set-variable]
qpgraph.c: In function 'ssd_A':
qpgraph.c:7969:17: warning: unused variable 'm' [-Wunused-variable]
qpgraph.c:7969:15: warning: unused variable 'k' [-Wunused-variable]
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:8098:5: warning: assignment from incompatible pointer type [enabled by default]
qpgraph.c: In function 'qp_ci_test_hmgm.isra.9':
qpgraph.c:3961:36: warning: 'rss1' may be used uninitialized in this function [-Wuninitialized]
qpgraph.c:3688:11: note: 'rss1' was declared here
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c reorder.c -o reorder.o
gcc -m64 -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LE:/biocbld/BBS-2˜1.14-/R/bin/x64 -lRlapack -LE:/biocbld/BBS-2˜1.14-/R/bin/x64 -lRblas -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.14-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.14-bioc/R/library/qpgraph/libs/x64
** testing if installed package can be loaded
* DONE (qpgraph)